Gene detail information of Glyur000251s00019370.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G59760.10RNA helicase, ATP-dependent, SK12/DOB1 protein
NRKHN24961.10Superkiller viralicidic activity 2-like 2 [Glycine soja]
COGYP_872964.16.00E-91DSH domain-containing protein [Acidothermus cellulolyticus 11B]
Swissprottr|B9DFG3|ISE2_ARATH2.00E-68DEAD-box ATP-dependent RNA helicase ISE2, chloroplastic (Precursor)
trEMBLtr|I1KZI0|I1KZI0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G47700.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002513377542216-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12598MTR4, SKIV2L2 EC:3.6.4.13 RNA degradation map03018


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding

GO:0016818  hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000251s00019370.1PF00270.24DEAD632016.00E-16
Glyur000251s00019370.1PF00271.26Helicase_C3354107.10E-07
Glyur000251s00019370.1PF13234.1rRNA_proc-arch4647375.20E-79
Glyur000251s00019370.1PF08148.7DSHCT7619382.90E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.760
SRR1783600control8.785
SRR1783602moderate drought stress10.387
SRR1811619moderate drought stress10.287

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.317
DRR006520Root Summer glycyrrhizin high producing strain15.902
DRR006521Root Winter glycyrrhizin high producing strain9.194
DRR006522Root Winter glycyrrhizin high producing strain8.981
DRR006523Root Summer glycyrrhizin low producing strain13.355
DRR006524Root Summer glycyrrhizin low producing strain13.214
DRR006525Leaf Summer glycyrrhizin high producing strain6.554
DRR006526Leaf Summer glycyrrhizin high producing strain6.474

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.009
SRR2868004Drought Stress(Tissue:root)16.453
SRR2967015Control (Tissue:root)17.701

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.525
SRR9715740Leave10.867
SRR9715741Leave10.802
SRR9715739Root0.731
SRR9715742Root10.720
SRR9715743Root8.582

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.726
SRR8749028MeJA induced 9h13.954
SRR8749029MeJA induced 9h9.017
SRR8749030Uninduced13.248
SRR8749031Uninduced12.602
SRR8749032Uninduced10.394

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root17.850
SRR8400027Control-Root15.621

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved