Gene detail information of Glyur000251s00019378.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G67440.1 | 4.00E-08 | Minichromosome maintenance (MCM2/3/5) family protein |
| NR | ACJ85084.1 | 4.21E-16 | unknown [Medicago truncatula] |
| COG | YP_007103543.1 | 2.00E-09 | ribosome biogenesis GTPase RsgA [Pseudanabaena sp. PCC 7367] |
| trEMBL | tr|B7FK05|B7FK05_MEDTR | 2.00E-16 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ85084.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00251 | 111139 | 112587 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K06949 | rsgA, engC | EC:3.6.1.- 3.1.3.100 | Thiamine metabolism | map00730 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000251s00019378.1 | PF03193.11 | DUF258 | 7 | 38 | 9.70E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.023 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.059 |
| SRR1811619 | moderate drought stress | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.346 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.861 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.844 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.079 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.263 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.091 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.236 |
| SRR2967015 | Control (Tissue:root) | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.942 |
| SRR9715740 | Leave | 4.065 |
| SRR9715741 | Leave | 9.647 |
| SRR9715739 | Root | 2.006 |
| SRR9715742 | Root | 5.470 |
| SRR9715743 | Root | 6.442 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.077 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 15.313 |
| SRR8400027 | Control-Root | 12.105 |