Gene detail information of Glyur000252s00012653.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G08630.1 | 0 | DDT domain-containing protein |
| NR | XP_004503869.1 | 0 | PREDICTED: DDT domain-containing protein DDB_G0282237-like [Cicer arietinum] |
| trEMBL | tr|G7LFT5|G7LFT5_MEDTR | 0 | Nucleosome/chromatin assembly factor group protein, putative {ECO:0000313|EMBL:AET04879.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00252 | 19972 | 25781 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | DDT |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000252s00012653.1 | PF10537.4 | WAC_Acf1_DNA_bd | 23 | 120 | 3.80E-28 |
| Glyur000252s00012653.1 | PF02791.12 | DDT | 304 | 363 | 1.40E-17 |
| Glyur000252s00012653.1 | PF15613.1 | WHIM2 | 583 | 608 | 8.10E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.267 |
| SRR1783600 | control | 3.354 |
| SRR1783602 | moderate drought stress | 2.871 |
| SRR1811619 | moderate drought stress | 2.852 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.487 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.401 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.061 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.384 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.627 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.578 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.580 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.422 |
| SRR2967015 | Control (Tissue:root) | 13.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.681 |
| SRR9715740 | Leave | 14.169 |
| SRR9715741 | Leave | 11.891 |
| SRR9715739 | Root | 0.812 |
| SRR9715742 | Root | 3.446 |
| SRR9715743 | Root | 2.854 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 36.910 |
| SRR8749028 | MeJA induced 9h | 35.676 |
| SRR8749029 | MeJA induced 9h | 32.194 |
| SRR8749030 | Uninduced | 17.920 |
| SRR8749031 | Uninduced | 18.268 |
| SRR8749032 | Uninduced | 9.299 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 16.870 |
| SRR8400027 | Control-Root | 15.001 |