Gene detail

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Gene detail information of Glyur000252s00012663.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38620.1	2.00E-69	myb domain protein 4
NR	XP_007137818.1	2.66E-109	hypothetical protein PHAVU_009G158200g [Phaseolus vulgaris]
Swissprot	tr\|Q9SZP1\|MYB4_ARATH	1.00E-88	Transcription repressor MYB4
trEMBL	tr\|V7AVZ1\|V7AVZ1_PHAVU	1.00E-109	Uncharacterized protein {ECO:0000313\|EMBL:ESW09812.1}

Sequence

Transcript Sequence

>Glyur000252s00012663.1
ATGGGTAGATCTCCTTGTTGCGAGAAAGAGCACACTAACAAAGGTGCTTGGTCCAAAGAGGAAGACGAACGCCTCATCAACTACATCAAGGCTCACGGCGAAGGCTGTTGGAGATCTCTCCCCAAAGCTGCTGGGTTGCTCCGGTGTGGCAAGAGTTGCAGGCTGAGGTGGATAAATTACCTGAGACCCGATCTCAAGAGAGGCAACTTCACTGAGGAAGAAGATGAACTCATCATTAACCTCCACAGCATGCTCGGAAACAAATGGTCTTTAATAGCTGGGAGGTTGCCTGGGAGAACAGACAACGAGATAAAGAACTACTGGAACACACACATCAAACGCAAACTCTATAGCCGCGGAATCGACCCTACAACCCATCAACCACTCNACGCCAACGCCAACGCCGCAGCAGCAACTTCCTCCTCAGCCGCCGCAGCAGCTCCACCCGCCGCAAACACTGCAGTGCTGCATCCTGTGGCCACAACAACAAGCAAGAAGAAGAGAGCCAACGAAGACAGCAGCAACATTAACAAGAAGAGTCGCAGCAGCAGCAGCGAGTTTCATCAGTTACTCATGAGTGCTGCCCATGTGAANAACACAAATACAAATGCAAATGCAACAAAGGTTGTGGTTGTTGAACACTCGAACAGCAGCAGTGGCGTTACTACGACAGAGGTGGTGCCAGATCAGGAATTGGCCTATCCACAACTCAACTTGGAACTCACCCTGGCCCCACCCTCTCAGTCTCAGCCCCTCCATGTTTCTTCCGTGAACGTTAACCCTGACGACAGCAATGACTACTTGAAACGACAACGACAGGAGCAGCAACAACAACAAGAAGCAGCAGCAGCAGTTAATTTGTACCCGTGGCGTGCCAACATTGGTACCAGNCAAGCTGTGTGTCTGTGTTATGGTCTAGGGTTCCAAAGTAACGGTTCTGCTTGTTGCTGCAACAAAGGAGGCATGGGTTATGCTGCTGCTGCTGCTGCTATGATTACTCCTCCACCTGTCACCGATCATAATAATCATCGTGTTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	82683	84957	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB
EAR motif-containing Proteins	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012663.1	PF00249.26	Myb_DNA-binding	14	61	1.00E-14
Glyur000252s00012663.1	PF00249.26	Myb_DNA-binding	67	111	2.70E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.468
SRR1783600	control	7.685
SRR1783602	moderate drought stress	5.729
SRR1811619	moderate drought stress	5.801

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.312
DRR006520	Root Summer glycyrrhizin high producing strain	0.311
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.213
DRR006524	Root Summer glycyrrhizin low producing strain	0.212
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.978
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.963

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	22.916
SRR2868004	Drought Stress(Tissue:root)	30.039
SRR2967015	Control (Tissue:root)	19.013

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	7.457
SRR9715740	Leave	11.814
SRR9715741	Leave	9.125
SRR9715739	Root	18.160
SRR9715742	Root	13.975
SRR9715743	Root	13.409

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.276
SRR8749028	MeJA induced 9h	10.576
SRR8749029	MeJA induced 9h	5.292
SRR8749030	Uninduced	1.754
SRR8749031	Uninduced	0.636
SRR8749032	Uninduced	0.592

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	27.122
SRR8400027	Control-Root	19.992