Gene detail

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Gene detail information of Glyur000252s00012685.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13420.1	2.00E-144	Aldolase-type TIM barrel family protein
NR	KEH20964.1	0	transaldolase family protein [Medicago truncatula]
COG	YP_919314.1	7.00E-116	transaldolase [Nocardioides sp. JS614]
Swissprot	tr\|P86071\|TALDO_CAPAA	8.00E-06	Transaldolase {ECO:0000250\|UniProtKB:P48983} (Fragments)
trEMBL	tr\|A0A072TTX3\|A0A072TTX3_MEDTR	0	Transaldolase family protein {ECO:0000313\|EMBL:KEH20964.1}

Sequence

Transcript Sequence

>Glyur000252s00012685.1
ATGGATAAGNGTAACGTGACAAGGGTCGAAAGAAGAACCATTCTGCACGATCTCTATGAGAAGCAGGGACAGAGCCCTTACTATGACAATCTCTGTCNCCCTGTTTCAGATTTGCTTCCTTTCATTGCCTCTGGAATCAGAGGTGTCACTACCAATCCTGCGATATTTGAAAGAGCTATATCATCTTCAAATGCTTACAATGAGCAGTTGAGGGAGCTGGTACAGGCGGGGAAAGACATAGAAAATGCCTACTGGGAATTGGTAGTGAAGGACATACAGGATACTTGCAAACTCTTGGAGCCAATTTACAATGAAAAAGATGGGCTAGATGGGTATGTATCTGTTGCAGTTTCCCCCAAGCTTGCAAATGATACCAAAGGGACAATCGAGGCTGCGAAATGGCTTCATAAAATGGTTGGATGTCCAAATGTTTACATTAAAATTCCTGCAACTGATGAATCCATCCCTTCAATAAAGGAGGTCATTTCTCTGGGGATAAGTGTCAATGTCACTGTAAGCTGCTGCAGCAATATGCTCATCGTTTGTGCATTTGAACAGCTCATATTCTCTCTCCCTAGATATGAAGCAGTCANTAATGCTTTTTTGGATGGCCTTGAAGCTTCTGGCATGACTGATCTCTCTAAGGTTTCAAGTGCAGCAGCTTTCTACATCAGTAGAGTGGATACAACACTTGACAAGAAACTTGAGNAAATTGGTACCTCTGAAGCTCTTGATCTCACAGGAAAGGGTGCGGTTGCTCAAGCAGTCTTAGCTTACCAGCTTTACCAGAAAATGTTTTCTGGTCCGCGGTGGGAGCGCCTGGAGAAGAGAGGTGCCAAGAAGCAGAGATTGATGTGGGCCTCAACAAATGTNAAAAATTCAGCTTACCCTGACACCTTTTATGTTGATTCTCTTATTGGACCAGATACGATTTCAACCATACCAGACCATGCTCTTCAGGCATTCATGGACCATGGTGTTCTCTCAAGAACCATTGATGNAAATGTATCAGAGTTCCAACGCATTTACAATGCAATTGAGAAGTTGGGGATTGATTGGAGTTCTGTTGGATCACTACTGGAACATGAGGTGCTGGATTCTTTCACACNAAGCTTTGAAAATGTGCTTGAATGCCTGCGAAAGAAGGCTAAGCATAGTGAATTCATCAACCTATAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00252	213298	215474	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00616	E2.2.1.2, talA, talB	EC:2.2.1.2	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Pentose phosphate pathway	map00030

Gene Ontology

biological_process

GO:0005975 carbohydrate metabolic process

GO:0006098 pentose-phosphate shunt

cellular_component GO:0005737 cytoplasm molecular_function GO:0003824 catalytic activity GO:0004801 sedoheptulose-7-phosphate:D-glyceraldehyde-3-phosphate glyceronetransferase activity "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000252s00012685.1	PF00923.14	Transaldolase	44	377	4.50E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.175
SRR1783600	control	0.158
SRR1783602	moderate drought stress	0.223
SRR1811619	moderate drought stress	0.214

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.092
DRR006520	Root Summer glycyrrhizin high producing strain	0.091
DRR006521	Root Winter glycyrrhizin high producing strain	0.094
DRR006522	Root Winter glycyrrhizin high producing strain	0.092
DRR006523	Root Summer glycyrrhizin low producing strain	0.580
DRR006524	Root Summer glycyrrhizin low producing strain	0.658
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.864
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.180

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	9.975
SRR2868004	Drought Stress(Tissue:root)	12.072
SRR2967015	Control (Tissue:root)	13.091

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.422
SRR9715740	Leave	8.641
SRR9715741	Leave	2.602
SRR9715739	Root	0.042
SRR9715742	Root	0.014
SRR9715743	Root	0.167

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.171
SRR8749028	MeJA induced 9h	0.305
SRR8749029	MeJA induced 9h	0.214
SRR8749030	Uninduced	1.058
SRR8749031	Uninduced	0.214
SRR8749032	Uninduced	0.097

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.573
SRR8400027	Control-Root	0.836