Gene detail information of Glyur000253s00020235.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G08510.2 | 0 | phospholipase C 2 |
NR | XP_004500490.1 | 0 | PREDICTED: phosphoinositide phospholipase C 2-like isoform X1 [Cicer arietinum] |
Swissprot | tr|Q39033|PLCD2_ARATH | 0 | Phosphoinositide phospholipase C 2 |
trEMBL | tr|Q1EIQ5|Q1EIQ5_VIGRA | 0 | Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00253 | 74187 | 78981 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000253s00020235.1 | PF09279.6 | EF-hand_like | 27 | 103 | 2.10E-21 |
Glyur000253s00020235.1 | PF00388.14 | PI-PLC-X | 110 | 252 | 2.10E-47 |
Glyur000253s00020235.1 | PF00387.14 | PI-PLC-Y | 357 | 445 | 6.40E-28 |
Glyur000253s00020235.1 | PF00168.25 | C2 | 467 | 559 | 1.60E-13 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 7.975 |
SRR1783600 | control | 8.117 |
SRR1783602 | moderate drought stress | 13.163 |
SRR1811619 | moderate drought stress | 12.976 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 21.478 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 21.230 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 26.034 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 25.329 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 75.582 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 74.592 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 40.265 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 38.742 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 71.668 |
SRR2868004 | Drought Stress(Tissue:root) | 95.406 |
SRR2967015 | Control (Tissue:root) | 74.560 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 326.912 |
SRR9715740 | Leave | 149.641 |
SRR9715741 | Leave | 314.225 |
SRR9715739 | Root | 27.614 |
SRR9715742 | Root | 118.523 |
SRR9715743 | Root | 103.851 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 18.117 |
SRR8749028 | MeJA induced 9h | 62.215 |
SRR8749029 | MeJA induced 9h | 36.400 |
SRR8749030 | Uninduced | 53.200 |
SRR8749031 | Uninduced | 17.172 |
SRR8749032 | Uninduced | 15.781 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 58.284 |
SRR8400027 | Control-Root | 96.892 |