Gene detail information of Glyur000253s00020235.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G08510.20phospholipase C 2
NRXP_004500490.10PREDICTED: phosphoinositide phospholipase C 2-like isoform X1 [Cicer arietinum]
Swissprottr|Q39033|PLCD2_ARATH0Phosphoinositide phospholipase C 2
trEMBLtr|Q1EIQ5|Q1EIQ5_VIGRA0Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002537418778981-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05857PLCD EC:3.1.4.11 Inositol phosphate metabolism map00562
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
Thyroid hormone signaling pathwaymap04919
AGE-RAGE signaling pathway in diabetic complicationsmap04933


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0007165  signal transduction

GO:0035556  intracellular signal transduction


molecular_function

GO:0004435  phosphatidylinositol phospholipase C activity

GO:0005515  protein binding

GO:0008081  phosphoric diester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000253s00020235.1PF09279.6EF-hand_like271032.10E-21
Glyur000253s00020235.1PF00388.14PI-PLC-X1102522.10E-47
Glyur000253s00020235.1PF00387.14PI-PLC-Y3574456.40E-28
Glyur000253s00020235.1PF00168.25C24675591.60E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.975
SRR1783600control8.117
SRR1783602moderate drought stress13.163
SRR1811619moderate drought stress12.976

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain21.478
DRR006520Root Summer glycyrrhizin high producing strain21.230
DRR006521Root Winter glycyrrhizin high producing strain26.034
DRR006522Root Winter glycyrrhizin high producing strain25.329
DRR006523Root Summer glycyrrhizin low producing strain75.582
DRR006524Root Summer glycyrrhizin low producing strain74.592
DRR006525Leaf Summer glycyrrhizin high producing strain40.265
DRR006526Leaf Summer glycyrrhizin high producing strain38.742

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)71.668
SRR2868004Drought Stress(Tissue:root)95.406
SRR2967015Control (Tissue:root)74.560

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave326.912
SRR9715740Leave149.641
SRR9715741Leave314.225
SRR9715739Root27.614
SRR9715742Root118.523
SRR9715743Root103.851

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.117
SRR8749028MeJA induced 9h62.215
SRR8749029MeJA induced 9h36.400
SRR8749030Uninduced53.200
SRR8749031Uninduced17.172
SRR8749032Uninduced15.781

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.284
SRR8400027Control-Root96.892

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved