Gene detail information of Glyur000253s00020236.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G40116.11.00E-152Phosphoinositide-specific phospholipase C family protein
NRXP_003600903.10Phosphoinositide phospholipase C [Medicago truncatula]
Swissprottr|Q8GV43|PLCD6_ARATH0Phosphoinositide phospholipase C 6
trEMBLtr|G7JBA2|G7JBA2_MEDTR0Phosphoinositide phospholipase C {ECO:0000256|RuleBase:RU361133}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002538116385647-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K05857PLCD EC:3.1.4.11 Inositol phosphate metabolism map00562
Calcium signaling pathwaymap04020
Phosphatidylinositol signaling systemmap04070
Thyroid hormone signaling pathwaymap04919
AGE-RAGE signaling pathway in diabetic complicationsmap04933


Gene Ontology

biological_process

GO:0006629  lipid metabolic process

GO:0007165  signal transduction

GO:0035556  intracellular signal transduction


molecular_function

GO:0004435  phosphatidylinositol phospholipase C activity

GO:0005515  protein binding

GO:0008081  phosphoric diester hydrolase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000253s00020236.1PF09279.6EF-hand_like24921.00E-06
Glyur000253s00020236.1PF00388.14PI-PLC-X1051562.70E-15
Glyur000253s00020236.1PF00388.14PI-PLC-X1592145.50E-08
Glyur000253s00020236.1PF00387.14PI-PLC-Y3063991.90E-28
Glyur000253s00020236.1PF00168.25C24215121.20E-16


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.174
SRR1783600control0.141
SRR1783602moderate drought stress0.203
SRR1811619moderate drought stress0.225

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.311
DRR006520Root Summer glycyrrhizin high producing strain0.183
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain1.036
DRR006524Root Summer glycyrrhizin low producing strain1.071
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.558
SRR2868004Drought Stress(Tissue:root)1.342
SRR2967015Control (Tissue:root)2.220

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.103
SRR9715740Leave0.055
SRR9715741Leave0.019
SRR9715739Root0.000
SRR9715742Root0.175
SRR9715743Root0.035

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.070
SRR8749030Uninduced0.078
SRR8749031Uninduced0.000
SRR8749032Uninduced0.033

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.353
SRR8400027Control-Root1.237

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved