Gene detail information of Glyur000253s00020248.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G05690.1 | 2.00E-180 | Cytochrome P450 superfamily protein |
NR | XP_003600878.1 | 0 | Cytochrome P450 [Medicago truncatula] |
COG | YP_001519436.1 | 3.00E-55 | cytochrome P450 family protein [Acaryochloris marina MBIC11017] |
Swissprot | tr|Q42569|C90A1_ARATH | 0 | Cytochrome P450 90A1 |
trEMBL | tr|G7JB77|G7JB77_MEDTR | 0 | Cytochrome P450 family monooxygenase {ECO:0000313|EMBL:AES71129.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00253 | 214594 | 222767 | - |
Gene family
Gene family | subfamily |
---|---|
Cytochrome P450 Family | CYP90A1 |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K09588 | CYP90A1, CPD | EC:1.14.-.- | Brassinosteroid biosynthesis | map00905 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000253s00020248.1 | PF00067.17 | p450 | 36 | 137 | 2.70E-05 |
Glyur000253s00020248.1 | PF00067.17 | p450 | 203 | 448 | 3.70E-55 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 19.691 |
SRR1783600 | control | 19.955 |
SRR1783602 | moderate drought stress | 22.897 |
SRR1811619 | moderate drought stress | 22.923 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 15.382 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 15.254 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 13.067 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 12.644 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 19.425 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 19.258 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 45.438 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 45.115 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 5.826 |
SRR2868004 | Drought Stress(Tissue:root) | 5.615 |
SRR2967015 | Control (Tissue:root) | 6.486 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 41.173 |
SRR9715740 | Leave | 51.625 |
SRR9715741 | Leave | 57.626 |
SRR9715739 | Root | 10.080 |
SRR9715742 | Root | 14.888 |
SRR9715743 | Root | 12.832 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 6.865 |
SRR8749028 | MeJA induced 9h | 4.518 |
SRR8749029 | MeJA induced 9h | 2.945 |
SRR8749030 | Uninduced | 34.919 |
SRR8749031 | Uninduced | 9.715 |
SRR8749032 | Uninduced | 22.144 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 8.931 |
SRR8400027 | Control-Root | 7.169 |