Gene detail information of Glyur000254s00017599.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G13500.3 | 1.00E-124 | |
| NR | BAP90378.1 | 0 | Hyp O-arabinosyltransferase homolog [Lotus japonicus] |
| trEMBL | tr|E9KID2|E9KID2_MEDTR | 0 | Root determined nodulation 1 {ECO:0000313|EMBL:ADV35716.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00254 | 75997 | 80289 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K20782 | HPAT | EC:2.4.2.58 | Other types of O-glycan biosynthesis | map00514 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.688 |
| SRR1783600 | control | 3.718 |
| SRR1783602 | moderate drought stress | 3.593 |
| SRR1811619 | moderate drought stress | 3.593 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.181 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.714 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.961 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.799 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 47.618 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 47.619 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.130 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 19.070 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.472 |
| SRR2967015 | Control (Tissue:root) | 19.954 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 35.199 |
| SRR9715740 | Leave | 17.037 |
| SRR9715741 | Leave | 37.135 |
| SRR9715739 | Root | 11.082 |
| SRR9715742 | Root | 29.691 |
| SRR9715743 | Root | 24.976 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 60.510 |
| SRR8749028 | MeJA induced 9h | 36.737 |
| SRR8749029 | MeJA induced 9h | 63.271 |
| SRR8749030 | Uninduced | 72.336 |
| SRR8749031 | Uninduced | 52.895 |
| SRR8749032 | Uninduced | 31.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.223 |
| SRR8400027 | Control-Root | 19.528 |