Gene detail information of Glyur000254s00017616.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT5G12200.1 | 7.00E-25 | pyrimidine 2 |
NR | XP_003617228.1 | 6.20E-34 | Dihydropyrimidinase [Medicago truncatula] |
trEMBL | tr|G7K315|G7K315_MEDTR | 2.00E-34 | Dihydropyrimidinase {ECO:0000313|EMBL:AET00187.1} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00254 | 160245 | 161262 | - |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K01464 | DPYS, dht, hydA | EC:3.5.2.2 | Pyrimidine metabolism | map00240 |
beta-Alanine metabolism | map00410 | |||
Pantothenate and CoA biosynthesis | map00770 | |||
Drug metabolism - other enzymes | map00983 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
-- | -- | -- | -- | -- |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 20.589 |
SRR1783600 | control | 18.453 |
SRR1783602 | moderate drought stress | 14.577 |
SRR1811619 | moderate drought stress | 14.329 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 19.784 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 17.572 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 24.814 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 22.402 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 14.418 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 16.227 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.813 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.814 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 32.829 |
SRR2868004 | Drought Stress(Tissue:root) | 40.864 |
SRR2967015 | Control (Tissue:root) | 31.739 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 30.199 |
SRR9715740 | Leave | 37.612 |
SRR9715741 | Leave | 41.908 |
SRR9715739 | Root | 9.701 |
SRR9715742 | Root | 25.352 |
SRR9715743 | Root | 23.390 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 15.241 |
SRR8749028 | MeJA induced 9h | 15.435 |
SRR8749029 | MeJA induced 9h | 15.056 |
SRR8749030 | Uninduced | 22.247 |
SRR8749031 | Uninduced | 12.961 |
SRR8749032 | Uninduced | 10.783 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 32.191 |
SRR8400027 | Control-Root | 25.127 |