Gene detail information of Glyur000254s00017619.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G46264.1 | 6.00E-33 | heat shock transcription factor B4 |
| NR | XP_004491224.1 | 6.22E-50 | PREDICTED: heat stress transcription factor B-4b-like [Cicer arietinum] |
| Swissprot | tr|Q7XHZ0|HFB4B_ORYSJ | 2.00E-40 | Heat stress transcription factor B-4b |
| trEMBL | tr|G7KCV7|G7KCV7_MEDTR | 2.00E-49 | Heat shock transcription factor {ECO:0000313|EMBL:AET00178.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00254 | 189231 | 191711 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HSF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000254s00017619.1 | PF00447.12 | HSF_DNA-bind | 28 | 86 | 7.50E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.360 |
| SRR1783600 | control | 1.279 |
| SRR1783602 | moderate drought stress | 1.318 |
| SRR1811619 | moderate drought stress | 1.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.243 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.200 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.273 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.543 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.014 |
| SRR2967015 | Control (Tissue:root) | 4.670 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.279 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.062 |
| SRR9715742 | Root | 0.386 |
| SRR9715743 | Root | 0.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.383 |
| SRR8400027 | Control-Root | 3.403 |