Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000255s00016811.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G43770.1	4.00E-180	Transducin/WD40 repeat-like superfamily protein
NR	XP_003554035.1	0	PREDICTED: U5 small nuclear ribonucleoprotein 40 kDa protein-like isoform 1 [Glycine max]
COG	YP_001864889.1	4.00E-45	hypothetical protein Npun_F1222 [Nostoc punctiforme PCC 73102]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	2.00E-32	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|I1N8B6\|I1N8B6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G29230.1}

Sequence

Transcript Sequence

>Glyur000255s00016811.1
ATGCAAGTTTTTCCTAGTGAAGGCGAAAATGCTTTGTCTGTTGTTGGTCCAAGGCCAATGGAATGGTCTACTGTTCCATATAGTGCTCCTCATGCNCCTGGACCAAATGGAAAGCAGCGGACCTCAAGTTTNGAATCGCCAATCATGTTGCTGACNGGTCACCAGAGTGCTGTTTATACCATGAAGTTCAATCCAGCAGGATCAGTCGTTGCATCTGGATCGCATGACAGAGAAATTTTCCTTTGGAATGTGCATGGGGATTGCAAGAACTTCATGGTTCTAAAAGGTCACAAGAATGCAGTTTTAGAACTTCACTGGACTACAGATGGGACACAGATAGTCTCTGCCAGCCCGGATAAAACACTGAGGGTATGGGATGTAGAAACAGGAAGACAAGTCAAAAAGATGGTAGAGCATCTCTCATATGTNAATAGTTGTTGTCCTTCCCGGAGGGGGCCGCCTCTTGTTGTCAGTGGCTCTGATGATGGAACCGCGAAATTATGGGATATGCGTCAAAGGGGTTCCATCCAAACATTCCCAGATAAATACCAGATTACAGCTGTCAGCTTCTCTGATGCCTCAGATAAGATCTACACTGGTGGTATTGATAANGATATCAAGGTATGGGATTTACGTAAAGGTGAGGTTACAATGACACTTCAAGGTCACCAAGATATGATTACTGGGATGCAATTGAGCCCTGATGGATCCTACCTTCTTACAAACGGCATGGATTGCAAGCTTTGCATTTGGGATATGCGCCCATATGCTCCGCAAAACCGCTGTGTGAAGATGTTGGAAGGGCACCAACACAACTTTGAAAAGAACTTGTTGAAATGTAGCTGGTCATCTGATGGAAGCAAGGTCACAGCTGGGAGTTCTGATCGAATGGTTTACATCTGGGATACCACTTCAAGACGCATATTGTATAAGCTTCCTGGGCACAATGGATCTGTTAATGAGTGTGTTTTTCATCCCAGTGAACCTATTATTGGATCTTGTAGTAGTGACAAGCAGATTTATCTTGGGGAGATATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00255	37130	38167	+

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000255s00016811.1	PF00400.27	WD40	48	83	1.00E-08
Glyur000255s00016811.1	PF00400.27	WD40	92	126	1.80E-07
Glyur000255s00016811.1	PF00400.27	WD40	132	169	1.20E-06
Glyur000255s00016811.1	PF00400.27	WD40	183	210	0.0011
Glyur000255s00016811.1	PF00400.27	WD40	214	252	7.80E-08
Glyur000255s00016811.1	PF00400.27	WD40	279	302	0.032
Glyur000255s00016811.1	PF00400.27	WD40	309	342	2.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.377
SRR1783600	control	13.891
SRR1783602	moderate drought stress	16.958
SRR1811619	moderate drought stress	16.622

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	35.370
DRR006520	Root Summer glycyrrhizin high producing strain	33.906
DRR006521	Root Winter glycyrrhizin high producing strain	45.780
DRR006522	Root Winter glycyrrhizin high producing strain	46.236
DRR006523	Root Summer glycyrrhizin low producing strain	28.806
DRR006524	Root Summer glycyrrhizin low producing strain	29.202
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.783
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.029

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	48.721
SRR2868004	Drought Stress(Tissue:root)	47.388
SRR2967015	Control (Tissue:root)	44.697

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	27.088
SRR9715740	Leave	31.059
SRR9715741	Leave	31.237
SRR9715739	Root	21.381
SRR9715742	Root	34.241
SRR9715743	Root	32.686

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	83.601
SRR8749028	MeJA induced 9h	55.893
SRR8749029	MeJA induced 9h	59.882
SRR8749030	Uninduced	27.965
SRR8749031	Uninduced	21.224
SRR8749032	Uninduced	29.409

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	37.113
SRR8400027	Control-Root	32.688