Gene detail information of Glyur000255s00016812.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G35910.11.00E-174Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain
NRXP_007161985.10hypothetical protein PHAVU_001G114400g [Phaseolus vulgaris]
COGYP_903266.16.00E-293'-5' exonuclease [Pelobacter propionicus DSM 2379]
trEMBLtr|V7CV18|V7CV18_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW33979.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002554133948755+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12591RRP6, EXOSC10 EC:3.1.13.- RNA degradation map03018


Gene Ontology

biological_process

GO:0006139  nucleobase-containing compound metabolic process

GO:0006396  RNA processing

GO:0044237  cellular metabolic process


cellular_component

GO:0000176  nuclear exosome (RNase complex)

GO:0005622  intracellular


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0003824  catalytic activity

GO:0008408  3'-5' exonuclease activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000255s00016812.1PF08066.7PMC2NT14949.70E-06
Glyur000255s00016812.1PF01612.15DNA_pol_A_exo11913689.20E-39
Glyur000255s00016812.1PF00570.18HRDC4254785.00E-14


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.111
SRR1783600control12.560
SRR1783602moderate drought stress15.323
SRR1811619moderate drought stress15.137

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.025
DRR006520Root Summer glycyrrhizin high producing strain13.702
DRR006521Root Winter glycyrrhizin high producing strain10.033
DRR006522Root Winter glycyrrhizin high producing strain9.264
DRR006523Root Summer glycyrrhizin low producing strain11.744
DRR006524Root Summer glycyrrhizin low producing strain11.658
DRR006525Leaf Summer glycyrrhizin high producing strain12.207
DRR006526Leaf Summer glycyrrhizin high producing strain11.919

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.446
SRR2868004Drought Stress(Tissue:root)18.711
SRR2967015Control (Tissue:root)19.303

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.317
SRR9715740Leave10.649
SRR9715741Leave9.968
SRR9715739Root1.384
SRR9715742Root8.915
SRR9715743Root8.203

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h30.967
SRR8749028MeJA induced 9h16.407
SRR8749029MeJA induced 9h15.503
SRR8749030Uninduced7.411
SRR8749031Uninduced5.706
SRR8749032Uninduced6.594

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.488
SRR8400027Control-Root22.670

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved