Gene detail information of Glyur000255s00016823.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G03740.1 | 1.00E-152 | BTB-POZ and MATH domain 4 |
| NR | XP_003548681.2 | 0 | PREDICTED: BTB/POZ and MATH domain-containing protein 4-like [Glycine max] |
| Swissprot | tr|Q9SRV1|BPM4_ARATH | 0 | BTB/POZ and MATH domain-containing protein 4 |
| trEMBL | tr|K7MF25|K7MF25_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G04060.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00255 | 121118 | 128704 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
| Ubiquitin Family | 3-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000255s00016823.1 | PF00917.21 | MATH | 49 | 117 | 0.036 |
| Glyur000255s00016823.1 | PF00651.26 | BTB | 168 | 286 | 5.80E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 37.833 |
| SRR1783600 | control | 37.404 |
| SRR1783602 | moderate drought stress | 60.695 |
| SRR1811619 | moderate drought stress | 59.750 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.962 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.645 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 60.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 58.677 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 48.645 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 49.801 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.500 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 24.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 47.464 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.581 |
| SRR2967015 | Control (Tissue:root) | 51.491 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 61.500 |
| SRR9715740 | Leave | 56.635 |
| SRR9715741 | Leave | 74.494 |
| SRR9715739 | Root | 52.611 |
| SRR9715742 | Root | 56.822 |
| SRR9715743 | Root | 56.683 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 73.534 |
| SRR8749028 | MeJA induced 9h | 50.753 |
| SRR8749029 | MeJA induced 9h | 66.446 |
| SRR8749030 | Uninduced | 55.461 |
| SRR8749031 | Uninduced | 88.703 |
| SRR8749032 | Uninduced | 92.184 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 46.446 |
| SRR8400027 | Control-Root | 44.452 |