Gene detail

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Gene detail information of Glyur000256s00016276.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G14210.1	4.00E-142	Leucine-rich repeat protein kinase family protein
NR	KHN45327.1	0	Putative inactive leucine-rich repeat receptor-like protein kinase [Glycine soja]
COG	YP_004775215.1	3.00E-26	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q8LFN2\|Y3037_ARATH	7.00E-82	Probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 (Precursor)
trEMBL	tr\|I1K1Z6\|I1K1Z6_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G15150.1}

Sequence

Transcript Sequence

>Glyur000256s00016276.1
TTAAGGACTTATTTGGAGTACCCTCCCTCATTGCAAATCTGGGGTGAAAATTACAAAGTTGACCTCTGTGGCCTTCCCTCATCTTCACATGTGAGCATTAAATGCCAAGATCATTCAGTAACTGAGCTTAAAATCATGGGTGAGTACAAATCCTTGAAGCCATCATCATCATCATCATCATCAAGCCTAAGAGTTCTCACCTTGGTATCCTTGGGGATTTGGGGGCAAATTCCTAATAAGATTCACTCTTTCAACTTGCTTCAAGTTTTGGACTTGAGCTCAAATTTCCTATTTGGTGCTATCCCACCAGAAGTATCCACAATGGTAAAGCTTCATTCACTAACACTTGATGACAACTATTTCAACACCACCATGCCTAATTGGTTTGATTCTGTGTGTAATCTAAGTATCTTGAGTTTGAAGAGTAACCAATTAAAGGGCTCATTCCCTTCCTCACTATGCAAAGTTAAGACTCTTGAGGTTATTTCCTTGTCCCACAATGAACTTTCTGGTGAATTGCCAAGTAGTCTTAATGCTGTCACTGGCCTACATGTTTTGGATTTAAGGGAAAACCATTTAGAATCTGAACTAGCACTTTTGCCCAAATCAGTGGGCACTGTTTTGCTGAGCAATAACTCATTCAAAGGAGAGATACCAAGGAAGTTTGGTGAATTGAATCAGCTTCAACATCTTGATCTTTCTTCAAATCATCTAAGTGGCACACCCCCTTCTGCCTTGTTCTCTTTGCCAAGCATCAGTTATTTGAATCTAGCAAGCAATTTGCCAAGTGGATCCCTTTCAGAGAAACTTAGATGTGGAAGCAAACTTGGGTATGTGAATATTTCTAGTAACAAGTTGAGTGGTGAATTTCCTTCTTGCTTGGCCAATATTTCTAATAGTAGAGTTGTGAGATATGGTGGGAACTGTTTATTTGTTGATTCTCAGCCTCAGCAGCAAAGAGGGTCTCATTGTAAAGAATCAACAGTGGCCATCATTGTTGGACTTGTTCTTGTGATTTTGGTGTCTGGAGTTTTCTTATGTAGAAAATGTCATTTGAGAAAGACAACTGGGCAGCAGGGTTTGTTGCTAAAGGTTGTCCAAGATAACTCCACAACTGGGGTTTCATCGGAACACCTTACAAATCTGTATAAAGGTAAACTAGAAAATGGATCTCACGTGGTGATACGATCTTTGGTTCTGTCAAAGAAATGCTCAGTTCAAAATCATAAAGCTAAGTTGGATTTACTCTCAAAGCTTCAACATCCAAATTTGGTTAGCCTTTTGGGTCATTGTATTGATGGTGGTGCACAAGATGATCCCAGCACCCACAGACTTCATCTTATATATGAGTATATGCCAAATGGGAATTATCGTACCCATCTATCAGAATTTTCTGCAGAGAAGGCACTTAAGTGGTCTGATAGACTGGCAATTTTGATTGGAGTTGCAAAGGCACATAACATTGCAAAACTAAGTGACTATGATATGTCCATCATCAACGAAGAAATTGAAAAGTTTGAGGCATCATTTGGAAGTCAAGATGGTAGAAGAAAGATTGTGGATCCAGTAGTGTTGACCACTTTCTCTCAAGAGTCACTATCAATTGCAATATCGATGACGACCAAGTGCATATCTCTAGACCCTTCATCTCGTCCTTCTTTTGAGGATGTTTCTATGGAACTTACAGTATGCAGCTCAAGTCCAAGCCACAGCAGATACAGATCAGAAATCTGATTGACCCACACAAGTGTGTTGGAGGCTCAAAGCTAAAGCTTCAAAGTCATCCATTCCTTCTCCATCAGTACATACAAAGAAACCAGGGGTATTTTAGTGAAAACACTTTGGGAGATGTCGATATTCATTGCAAATGTATAATAGTTGTAAAAAGGGAAAACATCATTTCCATTTCTTTCATTACTATACTTTTGGGGAAATAAATGAAATGAAGATGATACGTACACAGTAGAGAGTATCATTTGTTTTCCCAAAAACATAATAATAGAGGAGATGGAGAGAGAAAAAAAGAGGATTTTTTTTTCTTGTGAAAATGTTTGTACCATTTTTTTATAGGCAAATGCTAGTAAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00256	222717	227715	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.15.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0004713 protein tyrosine kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000256s00016276.1	PF00560.28	LRR_1	87	104	0.95
Glyur000256s00016276.1	PF00560.28	LRR_1	159	177	0.59
Glyur000256s00016276.1	PF13855.1	LRR_8	206	260	3.40E-09
Glyur000256s00016276.1	PF07714.12	Pkinase_Tyr	382	485	3.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.955
SRR1783600	control	4.865
SRR1783602	moderate drought stress	12.455
SRR1811619	moderate drought stress	12.173

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.454
DRR006520	Root Summer glycyrrhizin high producing strain	5.446
DRR006521	Root Winter glycyrrhizin high producing strain	4.912
DRR006522	Root Winter glycyrrhizin high producing strain	5.111
DRR006523	Root Summer glycyrrhizin low producing strain	3.675
DRR006524	Root Summer glycyrrhizin low producing strain	3.603
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.524
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.692

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.037
SRR2868004	Drought Stress(Tissue:root)	0.033
SRR2967015	Control (Tissue:root)	0.112

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	9.939
SRR9715740	Leave	4.997
SRR9715741	Leave	18.201
SRR9715739	Root	0.297
SRR9715742	Root	3.071
SRR9715743	Root	2.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.066
SRR8749028	MeJA induced 9h	0.457
SRR8749029	MeJA induced 9h	0.228
SRR8749030	Uninduced	0.008
SRR8749031	Uninduced	0.360
SRR8749032	Uninduced	0.333

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	15.807
SRR8400027	Control-Root	13.531