Gene detail

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Gene detail information of Glyur000257s00022014.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G69560.1	1.00E-47	myb domain protein 105
NR	XP_004489664.1	1.75E-109	PREDICTED: transcription factor MYB28-like [Cicer arietinum]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	7.00E-26	Transcription factor MYB44
trEMBL	tr\|V7C026\|V7C026_PHAVU	2.00E-108	Uncharacterized protein {ECO:0000313\|EMBL:ESW23509.1}

Sequence

Transcript Sequence

>Glyur000257s00022014.1
ATGAGTTCACTTCACTTCAACAACAGTGGTAGTGGTTATGGNTTCAGTGGGGACATGAGTGTTATTTTCCCATCAGCTCCTGTTCCTTCATCATCTTCTTCTTCTACCCTTCTTATGGCTCCTCATCAACCTTCTCTGTGTAACAACAGTACCTTTGGGTCTGAAAAGTCTGATATACCCTTTCAGATNTTGAACCCTGTTCCAATGAGAACAACAAATGATGAAGGGGATCATGAAGGGTATTTTGGGGATGAGAAAAAGAGCTTGTCTTTGAAACTTGGTGAGGAAGTTGAAGCTAATAACAGTGGTTCTGCTGCCACAGAGAAAGCTGGGCACACTAAGCTTTGTGTTAGAGGCCATTGGAGACCAGCTGAAGATGCCAAGCTCAAAGAGCTTGTTGCTCAATTTGGTCCTCAAAACTGGAACAACATTGCAGAATTGAGGTGGTTTAACCAGCTAGATCCTAGGATTAACAGAACAGCATTCACTGAGGAAGAAGAGGAAAAGCTCTTGGCTGCTCATAGGATGTATGGTAACAAATGGGCCATGATCTCAAGGCTGTTTCCNGGGAGAACAGACAATGCAGTGAAGAACCATTGGCATGTGATCATGGCTAGGAGGCAAAGGGAGCAGTCATGTCTCTACAGAAGGAGGAATAAGCCCTCAACATTTCATCAAAGCCCTGCTTCTGCTTCAAAGGGTTTGAATTTGATGACATTGACAAACAACAACAANAATGCAGCTAGTAATGATTCAACTATTTCTAGCACCATTGATGAATCTGCTGCCTCAACATGTACCAACCTCTCCCTCACTACTAGGCCTTTTCAATACCCTGTTCAGAATTACCATGCCTATGGATCACTAATGGGTTTGCCAGCTGAAAGCAGGGTGCCAACGGGGGATGTGGGTTTTGACAAGTTTTTCAGTGCTAAATATTGGAAGGGTTCATGTGAGGATGGTCACATGGGAAAGCTAATGAGTGTGGACCAACCCAATTATTCTGATTCAAACTCAGAAGTTTCAGTATCTGAGTCAGTTGCCACCAACAGGACCAGTACCAATCTATCAATTTTGGGGGNAAGTGAAGAAAATGTGAGGGATAAGATTGACATGCCATTCTTTGACTTTCTTGGAGTAGGAGACTCATAGAGGAATTTAATTTGTTTTGGTACAATAATGTTAATCTTTTAGCTCAAAGCAACAACAAAAGGCTCAAGTGGGGGTANAAAGGTCATAGTGGCTTGGTTTTGTGATGCAGTTAGGTTCTATCTGCACTCTTTGTGTACAGTTAGTTCCATTAAAGGCTAAATGTTACTAAGGTAAATTTTAGGTGAAATGAACAGAGGGAAGAATGAGAGGAAAAAAAAAACACAAAAATTGAGGTAGAGAAGATAGGGTAGTGTGTGTGTGTGTGTGTGTGTGTTTTTTTTTGTTTTATAATGAGTTATTATAACT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00257	17959	20376	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB-related

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000257s00022014.1	PF00249.26	Myb_DNA-binding	159	202	3.10E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.419
SRR1783600	control	0.435
SRR1783602	moderate drought stress	0.391
SRR1811619	moderate drought stress	0.416

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.651
DRR006520	Root Summer glycyrrhizin high producing strain	0.561
DRR006521	Root Winter glycyrrhizin high producing strain	13.689
DRR006522	Root Winter glycyrrhizin high producing strain	13.288
DRR006523	Root Summer glycyrrhizin low producing strain	0.823
DRR006524	Root Summer glycyrrhizin low producing strain	0.834
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.184
SRR2868004	Drought Stress(Tissue:root)	0.718
SRR2967015	Control (Tissue:root)	0.645

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.114
SRR9715740	Leave	0.130
SRR9715741	Leave	0.140
SRR9715739	Root	0.202
SRR9715742	Root	0.811
SRR9715743	Root	0.758

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.684
SRR8749028	MeJA induced 9h	6.055
SRR8749029	MeJA induced 9h	2.594
SRR8749030	Uninduced	0.529
SRR8749031	Uninduced	0.052
SRR8749032	Uninduced	0.108

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	2.679
SRR8400027	Control-Root	1.146