Gene detail information of Glyur000257s00022018.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G26010.18.00E-95Peroxidase superfamily protein
NRCDP11670.11.12E-146unnamed protein product [Coffea canephora]
Swissprottr|Q93V93|PER44_ARATH2.00E-115Peroxidase 44 (Precursor)
trEMBLtr|A0A068UT19|A0A068UT19_COFCA4.00E-147Coffea canephora DH200=94 genomic scaffold, scaffold_58 {ECO:0000313|EMBL:CDP11670.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002574719052994-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00430E1.11.1.7 EC:1.11.1.7 Phenylpropanoid biosynthesis map00940


Gene Ontology

biological_process

GO:0006979  response to oxidative stress

GO:0055114  oxidation-reduction process


molecular_function

GO:0004601  peroxidase activity

GO:0020037  heme binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000257s00022018.1PF00141.18peroxidase412875.60E-72
Glyur000257s00022018.1PF00141.18peroxidase4015222.20E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.254
SRR1783600control0.259
SRR1783602moderate drought stress0.697
SRR1811619moderate drought stress0.673

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.063
DRR006520Root Summer glycyrrhizin high producing strain0.063
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.130
DRR006524Root Summer glycyrrhizin low producing strain0.129
DRR006525Leaf Summer glycyrrhizin high producing strain0.054
DRR006526Leaf Summer glycyrrhizin high producing strain0.054

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.522
SRR2868004Drought Stress(Tissue:root)0.488
SRR2967015Control (Tissue:root)0.091

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.000
SRR9715740Leave0.000
SRR9715741Leave0.000
SRR9715739Root0.087
SRR9715742Root0.000
SRR9715743Root0.000

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.808
SRR8749028MeJA induced 9h1.162
SRR8749029MeJA induced 9h1.108
SRR8749030Uninduced0.985
SRR8749031Uninduced0.399
SRR8749032Uninduced0.319

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root0.320
SRR8400027Control-Root0.370

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved