Gene detail information of Glyur000257s00022019.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39660.2 | 3.00E-35 | cycling DOF factor 2 |
| NR | XP_007151521.1 | 7.36E-136 | hypothetical protein PHAVU_004G054000g [Phaseolus vulgaris] |
| Swissprot | tr|Q93ZL5|CDF2_ARATH | 5.00E-46 | Cyclic dof factor 2 |
| trEMBL | tr|V7C2J3|V7C2J3_PHAVU | 3.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:ESW23515.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00257 | 58544 | 62148 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000257s00022019.1 | PF02701.10 | zf-Dof | 118 | 162 | 6.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.760 |
| SRR1783600 | control | 4.998 |
| SRR1783602 | moderate drought stress | 2.317 |
| SRR1811619 | moderate drought stress | 2.195 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.658 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.694 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.649 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.714 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.845 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.753 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.620 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.028 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.000 |
| SRR2967015 | Control (Tissue:root) | 3.966 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.976 |
| SRR9715740 | Leave | 1.129 |
| SRR9715741 | Leave | 1.678 |
| SRR9715739 | Root | 0.044 |
| SRR9715742 | Root | 0.813 |
| SRR9715743 | Root | 1.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.485 |
| SRR8749028 | MeJA induced 9h | 6.449 |
| SRR8749029 | MeJA induced 9h | 1.714 |
| SRR8749030 | Uninduced | 1.608 |
| SRR8749031 | Uninduced | 0.898 |
| SRR8749032 | Uninduced | 0.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 5.652 |
| SRR8400027 | Control-Root | 4.078 |