Gene detail information of Glyur000258s00015253.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G39360.1 | 1.00E-122 | EID1-like 2 |
| NR | XP_004489441.1 | 1.54E-172 | PREDICTED: EID1-like F-box protein 2-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FLZ8|EDL2_ARATH | 6.00E-155 | EID1-like F-box protein 2 |
| trEMBL | tr|I3TAI7|I3TAI7_LOTJA | 7.00E-170 | Uncharacterized protein {ECO:0000313|EMBL:AFK49529.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 53094 | 55925 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.471 |
| SRR1783600 | control | 2.565 |
| SRR1783602 | moderate drought stress | 4.014 |
| SRR1811619 | moderate drought stress | 3.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.282 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.500 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.938 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.846 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.163 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.810 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.055 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 15.697 |
| SRR2868004 | Drought Stress(Tissue:root) | 28.085 |
| SRR2967015 | Control (Tissue:root) | 34.057 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.779 |
| SRR9715740 | Leave | 5.140 |
| SRR9715741 | Leave | 6.452 |
| SRR9715739 | Root | 3.978 |
| SRR9715742 | Root | 6.579 |
| SRR9715743 | Root | 6.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.199 |
| SRR8749028 | MeJA induced 9h | 5.131 |
| SRR8749029 | MeJA induced 9h | 3.239 |
| SRR8749030 | Uninduced | 2.519 |
| SRR8749031 | Uninduced | 1.853 |
| SRR8749032 | Uninduced | 1.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 14.577 |
| SRR8400027 | Control-Root | 13.734 |