Gene detail information of Glyur000258s00015260.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29270.2 | 4.00E-91 | RING/U-box superfamily protein |
| NR | NP_001241055.1 | 8.67E-171 | uncharacterized protein LOC100809368 [Glycine max] |
| trEMBL | tr|C6TIH4|C6TIH4_SOYBN | 3.00E-171 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G05870.4} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 87626 | 90721 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000258s00015260.1 | PF13445.1 | zf-RING_UBOX | 45 | 76 | 9.10E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 20.222 |
| SRR1783600 | control | 20.255 |
| SRR1783602 | moderate drought stress | 21.192 |
| SRR1811619 | moderate drought stress | 21.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.326 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.270 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.089 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.192 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.286 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.760 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.520 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.909 |
| SRR2967015 | Control (Tissue:root) | 24.436 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 8.149 |
| SRR9715740 | Leave | 8.984 |
| SRR9715741 | Leave | 8.478 |
| SRR9715739 | Root | 24.365 |
| SRR9715742 | Root | 19.761 |
| SRR9715743 | Root | 18.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.450 |
| SRR8749028 | MeJA induced 9h | 18.366 |
| SRR8749029 | MeJA induced 9h | 8.673 |
| SRR8749030 | Uninduced | 4.959 |
| SRR8749031 | Uninduced | 3.419 |
| SRR8749032 | Uninduced | 2.614 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.419 |
| SRR8400027 | Control-Root | 22.282 |