Gene detail information of Glyur000258s00015261.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G15400.10U-box domain-containing protein
NRXP_007151280.10hypothetical protein PHAVU_004G033100g [Phaseolus vulgaris]
Swissprottr|Q9LF41|UBE4_ARATH0Probable ubiquitin conjugation factor E4
trEMBLtr|V7BZG4|V7BZG4_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW23274.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0025894619102951+


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10597UBE4B, UFD2 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120


Gene Ontology

biological_process

GO:0006511  ubiquitin-dependent protein catabolic process

GO:0016567  protein ubiquitination


cellular_component

GO:0000151  ubiquitin ligase complex


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0034450  ubiquitin-ubiquitin ligase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000258s00015261.1PF10408.4Ufd2P_core2629261.80E-193
Glyur000258s00015261.1PF04564.10U-box94310147.70E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control33.260
SRR1783600control33.306
SRR1783602moderate drought stress35.472
SRR1811619moderate drought stress35.192

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain37.670
DRR006520Root Summer glycyrrhizin high producing strain37.202
DRR006521Root Winter glycyrrhizin high producing strain42.857
DRR006522Root Winter glycyrrhizin high producing strain41.485
DRR006523Root Summer glycyrrhizin low producing strain34.172
DRR006524Root Summer glycyrrhizin low producing strain33.861
DRR006525Leaf Summer glycyrrhizin high producing strain19.954
DRR006526Leaf Summer glycyrrhizin high producing strain19.897

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.450
SRR2868004Drought Stress(Tissue:root)52.391
SRR2967015Control (Tissue:root)54.574

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.964
SRR9715740Leave32.012
SRR9715741Leave40.023
SRR9715739Root6.821
SRR9715742Root36.586
SRR9715743Root31.065

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.985
SRR8749028MeJA induced 9h34.655
SRR8749029MeJA induced 9h18.309
SRR8749030Uninduced28.326
SRR8749031Uninduced23.230
SRR8749032Uninduced15.779

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.657
SRR8400027Control-Root40.902

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved