Gene detail information of Glyur000258s00015263.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G29200.11.00E-102chorismate mutase 1
NRXP_003543874.10PREDICTED: chorismate mutase 1, chloroplastic-like isoform 1 [Glycine max]
Swissprottr|P42738|CM1_ARATH3.00E-143Chorismate mutase 1, chloroplastic (Precursor)
trEMBLtr|I1LWP2|I1LWP2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G05830.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00258110415115589+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01850E5.4.99.5 EC:5.4.99.5 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0009073  aromatic amino acid family biosynthetic process

GO:0046417  chorismate metabolic process


molecular_function

GO:0004106  chorismate mutase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000258s00015263.1PF01817.16CM_2761431.20E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control34.610
SRR1783600control34.763
SRR1783602moderate drought stress21.045
SRR1811619moderate drought stress20.654

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.282
DRR006520Root Summer glycyrrhizin high producing strain16.068
DRR006521Root Winter glycyrrhizin high producing strain4.133
DRR006522Root Winter glycyrrhizin high producing strain3.842
DRR006523Root Summer glycyrrhizin low producing strain15.858
DRR006524Root Summer glycyrrhizin low producing strain15.983
DRR006525Leaf Summer glycyrrhizin high producing strain26.866
DRR006526Leaf Summer glycyrrhizin high producing strain26.784

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.021
SRR2868004Drought Stress(Tissue:root)56.350
SRR2967015Control (Tissue:root)47.929

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.263
SRR9715740Leave31.291
SRR9715741Leave54.684
SRR9715739Root9.182
SRR9715742Root23.488
SRR9715743Root21.875

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h25.799
SRR8749028MeJA induced 9h32.474
SRR8749029MeJA induced 9h17.201
SRR8749030Uninduced73.916
SRR8749031Uninduced66.197
SRR8749032Uninduced24.358

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root63.070
SRR8400027Control-Root59.123

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved