Gene detail

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Gene detail information of Glyur000258s00015269.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G39420.1	2.00E-176	CDC2C
NR	XP_004489426.1	0	PREDICTED: probable serine/threonine-protein kinase At1g09600-like [Cicer arietinum]
COG	YP_007468874.1	3.00E-23	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	4.00E-177	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|K7MW54\|K7MW54_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G03140.2}

Sequence

Transcript Sequence

>Glyur000258s00015269.1
ATGGGTTGCATTAACTCCAAGAATGCGGTTGCCGGAGCTTCTTCCCCGCCGCCTCCGGTAGACGCCAGAGACGGCGTGGAGGTTCTCCCTGCTTCTACCAAGGGAAATTCAGGGTTGCTTGTTTTGCAACCGAAGACATCATCAGAGGACAATTACAACAGGAACAACAATAAGAAGAAGAAGAAGTTCAGCAAAAATGGTTCCAAAAAAAGCAGTGGCTCATTCAGCTTCAGGCTTGGATTCACACATAGGTATGTTGAGGCTGAACAGAATGCTGCTGGTTGGCCTCCTTGGCTCACAGCTGCTGCAGCTGAAGCTGTTCAAGGATGGATCCCTCTCAAAGCTGATTCTTTTCAGAAGTTAGATAAGATTGGACAAGGTACATATAGCAGTGTGTTCCGAGCACGCGAAGTGGAAACCGGGAGGATGTTTGCCCTGAAGAAGGTGCGCTTTGATAATTTCCAACCTGAGAGCATTAGGTTCATGGCAAGAGAAATAACAATTCTCAGGAGGCTTGACCACCCAAACATCATGAAATTGGAGGGCATAATCACTTCCAAACTATCAAATAGCATTTACCTTGTGTTTGAATACATGGAGCATGATCTTGCTGGCCTAGTATCTCGACCTGACATCGTGTTCACTGATGCACAGATAAAATGCTACATGAGGCAGCTATTAAGTGGACTTGAGCATTGTCATGTCCGCGGTATCATGCATCGAGACATCAAAGTATCGAATATCTTGTTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACAATTAGCCCCAACAATAAGCATCATTTAACAAGTCGTGTAGTAACTCTATGGTATCGTCCTCCTGAGCTCTTGATGGGATCAACCAATTATGGAGTATCAGTCGATTTGTGGAGTGTTGGCTGTGTATTTGCAGAACTTTTTCTTGGGAAGCCTATACTTAAGGGGAGAACTGAGGTTGAACAATTACACAAAATTTTTAAGCTGTGTGGTTCTCCACCTGAAGAGTTCTGGAAAAAGTGCAAGCTTCCTCATGCAACAATGTTTAAACCTCAGACGAATTACGAAAGCTCTCTTCGGGAGAGGTGTGCAGATTTTCCAGAAACTGCTGTAAACCTACTCGAGACTTTGCTGTCCATTGACCCAACCAACCGTGGCACTGCCTCCTCTGCTCTAATATCTGAGTATTTCAGCACCATGCCTTATGCTTGTAATCCATCAAGCCTGCCAAAGTATCCACCTAGCAAAGAAATGGATGCTAAGGGCCGGGAAGATTCAGCCAGAAGGCAACAAAGACGAGGCTATAAAGGTTTGCAAGATCAGACCAATTTTGGCAAATCATCTGCAAAAGAGGACATGCAGAACATTTCTCAAAATACTCAAAGAGATGATAATGGTAAAGCACTTCCTCCAAAGGGAAAAGGAGGAGCTATGCACAAAGATCAATCAAAGCCTTCAATGGATACAATGTCAGAGACTTCCCAGATGGGGAATGTTGCCGATAGTAACGGATACAGTGTACCGATACAAGTCCCAGGATCTAACAATGATTTTACATGGGCAAAGAGGAGAAAACCAGATGCATCATCCACATTATCAGATGGATCAAAAAGCAAAATTAGTGCACTCGATCCGAACTTTGCGAAAGGCACATATGATTTAACCAACCAAAGGGTATCCATGGATTTTGATCCCAAAGAACTAATGAAAGCACAGGGCCANCGGAGCGCAGTTCGTAAGTCAAGGTTTGGAAGAGACAACTATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00258	151969	156954	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000258s00015269.1	PF00069.20	Pkinase	118	402	4.30E-67

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.273
SRR1783600	control	0.297
SRR1783602	moderate drought stress	0.128
SRR1811619	moderate drought stress	0.128

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.530
DRR006520	Root Summer glycyrrhizin high producing strain	0.664
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.475
DRR006524	Root Summer glycyrrhizin low producing strain	0.515
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.104
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.308
SRR2868004	Drought Stress(Tissue:root)	1.303
SRR2967015	Control (Tissue:root)	0.841

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.209
SRR9715740	Leave	0.080
SRR9715741	Leave	0.097
SRR9715739	Root	0.000
SRR9715742	Root	0.156
SRR9715743	Root	0.172

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.145
SRR8749029	MeJA induced 9h	0.068
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.002
SRR8749032	Uninduced	0.032

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.914
SRR8400027	Control-Root	1.027