Gene detail information of Glyur000258s00015278.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G29090.1 | 1.00E-110 | pectin methylesterase 31 |
| NR | XP_008805248.1 | 4.72E-155 | PREDICTED: pectinesterase 31-like isoform X2 [Phoenix dactylifera] |
| COG | YP_003997686.1 | 3.00E-49 | pectinesterase [Leadbetterella byssophila DSM 17132] |
| Swissprot | tr|Q9LVQ0|PME31_ARATH | 6.00E-138 | Pectinesterase 31 |
| trEMBL | tr|A0A067FZ31|A0A067FZ31_CITSI | 5.00E-151 | Pectinesterase {ECO:0000256|RuleBase:RU000589} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00258 | 206086 | 210568 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CE8 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01051 | E3.1.1.11 | EC:3.1.1.11 | Pentose and glucuronate interconversions | map00040 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000258s00015278.1 | PF01095.14 | Pectinesterase | 32 | 231 | 4.30E-52 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.583 |
| SRR1783600 | control | 1.437 |
| SRR1783602 | moderate drought stress | 1.433 |
| SRR1811619 | moderate drought stress | 1.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.816 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.378 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.770 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.048 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.621 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.239 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.767 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.652 |
| SRR2967015 | Control (Tissue:root) | 2.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.686 |
| SRR9715740 | Leave | 4.451 |
| SRR9715741 | Leave | 4.906 |
| SRR9715739 | Root | 0.107 |
| SRR9715742 | Root | 1.610 |
| SRR9715743 | Root | 1.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.543 |
| SRR8749028 | MeJA induced 9h | 0.413 |
| SRR8749029 | MeJA induced 9h | 0.385 |
| SRR8749030 | Uninduced | 1.232 |
| SRR8749031 | Uninduced | 0.326 |
| SRR8749032 | Uninduced | 0.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.321 |
| SRR8400027 | Control-Root | 1.872 |