Gene detail information of Glyur000259s00016749.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G32990.1 | 0 | glycosyl hydrolase 9B8 |
| NR | XP_003616918.1 | 0 | Endoglucanase [Medicago truncatula] |
| COG | YP_007159459.1 | 2.00E-93 | Cellulase [Anabaena cylindrica PCC 7122] |
| Swissprot | tr|O48766|GUN11_ARATH | 0 | Endoglucanase 11 (Precursor) |
| trEMBL | tr|G7K7J2|G7K7J2_MEDTR | 0 | Glycosyl hydrolase family 9 protein {ECO:0000313|EMBL:AES99876.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 128322 | 133167 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH9 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000259s00016749.1 | PF00759.14 | Glyco_hydro_9 | 49 | 507 | 4.20E-156 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.395 |
| SRR1783600 | control | 0.414 |
| SRR1783602 | moderate drought stress | 0.519 |
| SRR1811619 | moderate drought stress | 0.445 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.803 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.751 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.959 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.961 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.361 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.772 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.468 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.721 |
| SRR2967015 | Control (Tissue:root) | 0.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.310 |
| SRR9715740 | Leave | 0.100 |
| SRR9715741 | Leave | 0.122 |
| SRR9715739 | Root | 0.103 |
| SRR9715742 | Root | 0.369 |
| SRR9715743 | Root | 0.302 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.334 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.247 |
| SRR8400027 | Control-Root | 1.128 |