Gene detail information of Glyur000259s00016750.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42370.1 | 1.00E-165 | Calcineurin-like metallo-phosphoesterase superfamily protein |
| NR | XP_004491121.1 | 0 | PREDICTED: uncharacterized protein LOC101494542 [Cicer arietinum] |
| COG | YP_003369369.1 | 3.00E-75 | phosphodiesterase [Pirellula staleyi DSM 6068] |
| trEMBL | tr|G7K7J7|G7K7J7_MEDTR | 0 | Calcineurin-metallo-phosphoesterase-like protein {ECO:0000313|EMBL:AES99881.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00259 | 135407 | 139986 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01113 | phoD | EC:3.1.3.1 | Folate biosynthesis | map00790 |
| Aminobenzoate degradation | map00627 | |||
| Two-component system | map02020 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000259s00016750.1 | PF09423.5 | PhoD | 39 | 296 | 1.40E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.680 |
| SRR1783600 | control | 6.575 |
| SRR1783602 | moderate drought stress | 4.987 |
| SRR1811619 | moderate drought stress | 5.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.722 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.945 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.575 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.351 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.165 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.103 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.426 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 12.138 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.965 |
| SRR2967015 | Control (Tissue:root) | 9.767 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.858 |
| SRR9715740 | Leave | 5.878 |
| SRR9715741 | Leave | 7.123 |
| SRR9715739 | Root | 3.232 |
| SRR9715742 | Root | 6.258 |
| SRR9715743 | Root | 5.453 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.558 |
| SRR8749028 | MeJA induced 9h | 6.804 |
| SRR8749029 | MeJA induced 9h | 5.490 |
| SRR8749030 | Uninduced | 5.351 |
| SRR8749031 | Uninduced | 6.014 |
| SRR8749032 | Uninduced | 4.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 19.931 |
| SRR8400027 | Control-Root | 19.204 |