Gene detail information of Glyur000259s00016751.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G33580.17.00E-112Protein kinase superfamily protein
NRBAI79278.10LysM type receptor kinase [Lotus japonicus]
COGNP_347044.13.00E-18Ser/Thr protein kinase [Clostridium acetobutylicum ATCC 824]
Swissprottr|O22808|LYK5_ARATH0Protein LYK5 (Precursor)
trEMBLtr|D3KU01|D3KU01_LOTJA0LysM type receptor kinase {ECO:0000313|EMBL:BAI79278.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00259141858143858+


Gene family

Gene familysubfamily
Protein Kinases FamilyPPC:1.1.3


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006468  protein phosphorylation


molecular_function

GO:0004672  protein kinase activity

GO:0005524  ATP binding

GO:0016772  transferase activity, transferring phosphorus-containing groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000259s00016751.1PF01476.15LysM1942371.40E-06
Glyur000259s00016751.1PF00069.20Pkinase3766334.50E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.656
SRR1783600control10.759
SRR1783602moderate drought stress7.108
SRR1811619moderate drought stress7.102

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain44.736
DRR006520Root Summer glycyrrhizin high producing strain43.918
DRR006521Root Winter glycyrrhizin high producing strain2.052
DRR006522Root Winter glycyrrhizin high producing strain1.965
DRR006523Root Summer glycyrrhizin low producing strain44.567
DRR006524Root Summer glycyrrhizin low producing strain44.548
DRR006525Leaf Summer glycyrrhizin high producing strain14.317
DRR006526Leaf Summer glycyrrhizin high producing strain14.643

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.144
SRR2868004Drought Stress(Tissue:root)36.326
SRR2967015Control (Tissue:root)43.886

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave87.601
SRR9715740Leave63.179
SRR9715741Leave122.235
SRR9715739Root156.787
SRR9715742Root228.769
SRR9715743Root206.182

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.783
SRR8749028MeJA induced 9h66.205
SRR8749029MeJA induced 9h32.673
SRR8749030Uninduced73.696
SRR8749031Uninduced70.455
SRR8749032Uninduced29.579

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.663
SRR8400027Control-Root35.383

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved