Gene detail

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Gene detail information of Glyur000259s00016757.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62360.1	6.00E-83	KNOX/ELK homeobox transcription factor
NR	XP_007141628.1	2.24E-177	hypothetical protein PHAVU_008G212100g [Phaseolus vulgaris]
Swissprot	tr\|P46608\|HSBH1_SOYBN	2.00E-115	Homeobox protein SBH1
trEMBL	tr\|V7B6U2\|V7B6U2_PHAVU	8.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:ESW13622.1}

Sequence

Transcript Sequence

>Glyur000259s00016757.1
ATGATAGGGTTTGGAGGGAACAGTTGCAGTGAGCTTTCTTCAATGGATATGATGAACATGGAAACTAATAGGAAGTTCCTTTCTCTGCCTCTACTGAGCAACAACAACAACATTTCTTCTGGTTCTGCTCAAATGCGCAATAACAACAACGTTGGTCCTCATCATCATCAGGATCATCATAACCACAATAACTACAGCCACCAGCAGCAGCAGGACCACAACAACAACAACACTTGCAGTAGTGCTGTGACTGTGAGGGATAAAATCATGGCACACCCTCTCTTTCCTCGTCTCTTGTCCTCTTACCTCAATTGCTTGAAGGTTGGAGCACCTCCTGAGGTGGTGGCTAGCTTGGAGGAGTCATGTGCAAAATGTGAATCTTTGAATAATGCTTNTGGAGGAAGGGCAGGAACAGGTTCCATAGGGGAAGATCCAGCTTTGGATCAGTTCATGGAGGCATACTGTGAGATGCTCATCAAGTATGAGCAAGAGCTTACAAAACCCTTCAAGGAAGCCATGCTTTTCTTTTCAAGAATTGAGTGTCAGCTTAAGGCCCTGGCAGTTTCAACAGACTTTGGTCAAAGTGAATCATCTTCACTACAGAATGAGGTTGATTTGCATGAGAACAACCTTGATACTCATGCTGAAGATAGGGAATTGAAAGTGCAGCTTTTGCGCAAGTATAGTGGATATCTGGGAAGCCTGAAGAAGGAGTTTTTGAAGAAGAAAAANAATGGCAAGTTGCCAAAGGAAGCTCGGCAGCAACTACTGGATTGGTGGAACAGGCATTACAAATGGCCTTACCCTTCGGAATCCCAAAAGCAAGCACTAGCAGAAACGACGGGGCTAGATCTGAAGCAGATAAACAACTGGTTCATCAATCAGAGGAAACGTCATTGGAAGCCTTCTGAGGACATGCAATTTGCCGTCATGGATGCAACTAACTACTACATGGAAAATGTNATGTGCAAACCATTCCCCATGGATGCCATGCCCATGCTCCTCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00259	161500	165229	-

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0003677 DNA binding GO:0043565 sequence-specific DNA binding "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000259s00016757.1	PF03790.8	KNOX1	85	125	2.30E-16
Glyur000259s00016757.1	PF03791.8	KNOX2	139	186	1.60E-23
Glyur000259s00016757.1	PF03789.8	ELK	219	240	6.90E-10
Glyur000259s00016757.1	PF05920.6	Homeobox_KN	259	298	9.20E-16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.036
SRR1783600	control	0.036
SRR1783602	moderate drought stress	0.909
SRR1811619	moderate drought stress	0.893

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.703
DRR006520	Root Summer glycyrrhizin high producing strain	0.701
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.218
DRR006524	Root Summer glycyrrhizin low producing strain	0.218
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.042
SRR2868004	Drought Stress(Tissue:root)	0.166
SRR2967015	Control (Tissue:root)	0.051

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.000
SRR9715740	Leave	0.000
SRR9715741	Leave	0.000
SRR9715739	Root	0.000
SRR9715742	Root	5.240
SRR9715743	Root	4.200

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.141
SRR8749028	MeJA induced 9h	0.066
SRR8749029	MeJA induced 9h	0.369
SRR8749030	Uninduced	0.032
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.147

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.875
SRR8400027	Control-Root	7.217