Gene detail information of Glyur000260s00013522.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G25080.56.00E-117magnesium-protoporphyrin IX methyltransferase
NRXP_007159960.10hypothetical protein PHAVU_002G281900g [Phaseolus vulgaris]
COGYP_007111334.17.00E-95Mg-protoporphyrin IX methyltransferase [Geitlerinema sp. PCC 7407]
Swissprottr|Q9SW18|CHLM_ARATH1.00E-154Magnesium protoporphyrin IX methyltransferase, chloroplastic (Precursor)
trEMBLtr|V7CRR1|V7CRR1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW31955.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002602658829443-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03428bchM, chlM EC:2.1.1.11 Porphyrin and chlorophyll metabolism map00860


Gene Ontology

biological_process

GO:0015995  chlorophyll biosynthetic process


molecular_function

GO:0046406  magnesium protoporphyrin IX methyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000260s00013522.1PF07109.6Mg-por_mtran_C2263222.80E-37


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.656
SRR1783600control3.661
SRR1783602moderate drought stress3.186
SRR1811619moderate drought stress3.150

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain3.023
DRR006520Root Summer glycyrrhizin high producing strain2.924
DRR006521Root Winter glycyrrhizin high producing strain3.924
DRR006522Root Winter glycyrrhizin high producing strain3.832
DRR006523Root Summer glycyrrhizin low producing strain3.277
DRR006524Root Summer glycyrrhizin low producing strain3.073
DRR006525Leaf Summer glycyrrhizin high producing strain118.115
DRR006526Leaf Summer glycyrrhizin high producing strain118.128

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.867
SRR2868004Drought Stress(Tissue:root)7.470
SRR2967015Control (Tissue:root)6.203

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave118.962
SRR9715740Leave109.370
SRR9715741Leave85.601
SRR9715739Root6.961
SRR9715742Root8.254
SRR9715743Root6.687

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.348
SRR8749028MeJA induced 9h11.607
SRR8749029MeJA induced 9h11.039
SRR8749030Uninduced9.209
SRR8749031Uninduced4.560
SRR8749032Uninduced12.309

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root9.260
SRR8400027Control-Root9.782

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved