Gene detail information of Glyur000260s00013529.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G26744.4 | 2.00E-57 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_009373630.1 | 4.65E-107 | PREDICTED: transcription factor ICE1-like [Pyrus x bretschneideri] |
| Swissprot | tr|Q9LSE2|ICE1_ARATH | 4.00E-71 | Transcription factor ICE1 |
| trEMBL | tr|F2YGR3|F2YGR3_9ROSI | 3.00E-107 | ICE-like protein {ECO:0000313|EMBL:ADZ48234.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00260 | 81356 | 83330 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000260s00013529.1 | PF00010.21 | HLH | 318 | 360 | 4.20E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.222 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.308 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.194 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.485 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.713 |
| SRR2967015 | Control (Tissue:root) | 1.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.287 |
| SRR9715740 | Leave | 0.798 |
| SRR9715741 | Leave | 2.648 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.043 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.054 |
| SRR8749028 | MeJA induced 9h | 0.140 |
| SRR8749029 | MeJA induced 9h | 0.166 |
| SRR8749030 | Uninduced | 0.089 |
| SRR8749031 | Uninduced | 0.042 |
| SRR8749032 | Uninduced | 0.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.035 |
| SRR8400027 | Control-Root | 0.049 |