Gene detail information of Glyur000261s00014351.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44800.10chromatin remodeling 4
NRXP_007158901.10hypothetical protein PHAVU_002G191300g [Phaseolus vulgaris]
COGNP_249490.15.00E-65helicase [Pseudomonas aeruginosa PAO1]
Swissprottr|F4KBP5|CHR4_ARATH0Protein CHROMATIN REMODELING 4 {ECO:0000303|PubMed:16547115}
trEMBLtr|V7CNS5|V7CNS5_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW30895.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002615450169571-


Gene family

Gene familysubfamily
Transcription Factors FamilyPHD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000261s00014351.1PF00628.24PHD841252.00E-09
Glyur000261s00014351.1PF00385.19Chromo6106492.20E-05
Glyur000261s00014351.1PF00385.19Chromo6657117.80E-10
Glyur000261s00014351.1PF00176.18SNF2_N76010501.50E-68
Glyur000261s00014351.1PF00271.26Helicase_C111811874.20E-12
Glyur000261s00014351.1PF06465.8DUF1087137014119.10E-06


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.431
SRR1783600control11.552
SRR1783602moderate drought stress15.847
SRR1811619moderate drought stress15.866

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain9.921
DRR006520Root Summer glycyrrhizin high producing strain9.870
DRR006521Root Winter glycyrrhizin high producing strain6.973
DRR006522Root Winter glycyrrhizin high producing strain6.743
DRR006523Root Summer glycyrrhizin low producing strain9.515
DRR006524Root Summer glycyrrhizin low producing strain9.509
DRR006525Leaf Summer glycyrrhizin high producing strain4.747
DRR006526Leaf Summer glycyrrhizin high producing strain4.688

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)14.374
SRR2868004Drought Stress(Tissue:root)15.498
SRR2967015Control (Tissue:root)16.300

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.434
SRR9715740Leave7.703
SRR9715741Leave8.336
SRR9715739Root1.712
SRR9715742Root10.234
SRR9715743Root8.682

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.327
SRR8749028MeJA induced 9h15.278
SRR8749029MeJA induced 9h11.650
SRR8749030Uninduced12.156
SRR8749031Uninduced24.332
SRR8749032Uninduced15.032

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root13.750
SRR8400027Control-Root14.432

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved