Gene detail information of Glyur000261s00014353.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G20330.16.00E-143PYRIMIDINE B
NRQ43087.10RecName: Full=Aspartate carbamoyltransferase 2, chloroplastic; AltName: Full=Aspartate transcarbamylase 2; Short=ATCase 2; Flags: Precursor [Pisum sativum]
COGYP_003320102.13.00E-113aspartate carbamoyltransferase [Sphaerobacter thermophilus DSM 20745]
Swissprottr|Q43087|PYRB2_PEA0Aspartate carbamoyltransferase 2, chloroplastic (Precursor)
trEMBLtr|B9V281|B9V281_MEDTR0Plastid aspartate carbamoyltransferase {ECO:0000313|EMBL:ACM47215.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002617548778463-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00609pyrB, PYR2 EC:2.1.3.2 Pyrimidine metabolism map00240
Alanine, aspartate and glutamate metabolismmap00250


Gene Ontology

biological_process

GO:0006207  'de novo' pyrimidine nucleobase biosynthetic process

GO:0006520  cellular amino acid metabolic process


molecular_function

GO:0004070  aspartate carbamoyltransferase activity

GO:0016597  amino acid binding

GO:0016743  carboxyl- or carbamoyltransferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000261s00014353.1PF02729.16OTCace_N361781.60E-43
Glyur000261s00014353.1PF00185.19OTCace1843447.50E-35


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.843
SRR1783600control8.695
SRR1783602moderate drought stress9.335
SRR1811619moderate drought stress9.621

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.659
DRR006520Root Summer glycyrrhizin high producing strain19.928
DRR006521Root Winter glycyrrhizin high producing strain17.327
DRR006522Root Winter glycyrrhizin high producing strain17.117
DRR006523Root Summer glycyrrhizin low producing strain21.482
DRR006524Root Summer glycyrrhizin low producing strain22.607
DRR006525Leaf Summer glycyrrhizin high producing strain7.619
DRR006526Leaf Summer glycyrrhizin high producing strain7.605

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)26.428
SRR2868004Drought Stress(Tissue:root)30.123
SRR2967015Control (Tissue:root)27.582

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.309
SRR9715740Leave21.040
SRR9715741Leave24.437
SRR9715739Root8.104
SRR9715742Root16.524
SRR9715743Root17.478

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.374
SRR8749028MeJA induced 9h11.945
SRR8749029MeJA induced 9h16.035
SRR8749030Uninduced5.260
SRR8749031Uninduced4.343
SRR8749032Uninduced3.806

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.799
SRR8400027Control-Root17.603

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved