Gene detail information of Glyur000261s00014357.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G58230.10Transducin/WD40 repeat-like superfamily protein
NRAAZ03745.10WD-40 repeat protein [Pisum sativum]
COGYP_001868564.11.00E-15hypothetical protein Npun_F5300 [Nostoc punctiforme PCC 73102]
Swissprottr|O22466|MSI1_SOLLC0WD-40 repeat-containing protein MSI1
trEMBLtr|Q1I184|Q1I184_PEA0WD-40 repeat protein {ECO:0000313|EMBL:AAZ03745.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002618514389553+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000261s00014357.1PF12265.3CAF1C_H4-bd20911.20E-28
Glyur000261s00014357.1PF00400.27WD401742090.00025
Glyur000261s00014357.1PF00400.27WD402232580.097
Glyur000261s00014357.1PF00400.27WD402663042.00E-10
Glyur000261s00014357.1PF00400.27WD403113480.0054
Glyur000261s00014357.1PF00400.27WD403684040.00014


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control82.295
SRR1783600control83.731
SRR1783602moderate drought stress157.617
SRR1811619moderate drought stress157.616

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain93.384
DRR006520Root Summer glycyrrhizin high producing strain92.797
DRR006521Root Winter glycyrrhizin high producing strain58.701
DRR006522Root Winter glycyrrhizin high producing strain57.429
DRR006523Root Summer glycyrrhizin low producing strain108.599
DRR006524Root Summer glycyrrhizin low producing strain109.470
DRR006525Leaf Summer glycyrrhizin high producing strain26.231
DRR006526Leaf Summer glycyrrhizin high producing strain26.574

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)81.246
SRR2868004Drought Stress(Tissue:root)83.042
SRR2967015Control (Tissue:root)91.316

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave44.968
SRR9715740Leave57.568
SRR9715741Leave57.491
SRR9715739Root113.533
SRR9715742Root94.633
SRR9715743Root93.532

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h105.723
SRR8749028MeJA induced 9h48.044
SRR8749029MeJA induced 9h59.416
SRR8749030Uninduced18.877
SRR8749031Uninduced10.831
SRR8749032Uninduced32.392

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root87.791
SRR8400027Control-Root86.164

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved