Gene detail information of Glyur000261s00014370.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G46280.10Minichromosome maintenance (MCM2/3/5) family protein
NRXP_007158936.10hypothetical protein PHAVU_002G194200g [Phaseolus vulgaris]
COGYP_008432137.11.00E-121Minichromosome maintenance protein MCM [Thermofilum sp. 1910b]
Swissprottr|Q9FL33|MCM3_ARATH0DNA replication licensing factor MCM3
trEMBLtr|V7CNV8|V7CNV8_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW30930.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00261169749175382-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K02541MCM3 EC:3.6.4.12 DNA replication map03030
Cell cyclemap04110
Cell cycle - yeastmap04111
Meiosis - yeastmap04113


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0006270  DNA replication initiation


cellular_component

GO:0005634  nucleus

GO:0042555  MCM complex


molecular_function

GO:0003677  DNA binding

GO:0003678  DNA helicase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000261s00014370.1PF14551.1MCM_N121241.70E-17
Glyur000261s00014370.1PF00493.18MCM2766392.80E-130


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control17.426
SRR1783600control17.485
SRR1783602moderate drought stress6.883
SRR1811619moderate drought stress7.129

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.164
DRR006520Root Summer glycyrrhizin high producing strain11.297
DRR006521Root Winter glycyrrhizin high producing strain1.058
DRR006522Root Winter glycyrrhizin high producing strain1.073
DRR006523Root Summer glycyrrhizin low producing strain5.345
DRR006524Root Summer glycyrrhizin low producing strain5.276
DRR006525Leaf Summer glycyrrhizin high producing strain2.331
DRR006526Leaf Summer glycyrrhizin high producing strain2.380

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)34.538
SRR2868004Drought Stress(Tissue:root)16.930
SRR2967015Control (Tissue:root)16.267

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.939
SRR9715740Leave0.541
SRR9715741Leave1.495
SRR9715739Root2.794
SRR9715742Root8.231
SRR9715743Root6.475

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h99.532
SRR8749028MeJA induced 9h27.390
SRR8749029MeJA induced 9h41.356
SRR8749030Uninduced0.872
SRR8749031Uninduced0.585
SRR8749032Uninduced1.090

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root32.800
SRR8400027Control-Root26.930

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved