Gene detail information of Glyur000261s00014371.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G46290.103-ketoacyl-acyl carrier protein synthase I
NRXP_007158937.10hypothetical protein PHAVU_002G194300g [Phaseolus vulgaris]
COGYP_008237.103-oxoacyl-ACP synthase [Candidatus Protochlamydia amoebophila UWE25]
Swissprottr|P52410|KASC1_ARATH03-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic (Precursor)
trEMBLtr|V7CPR5|V7CPR5_PHAVU03-oxoacyl-[acyl-carrier-protein] synthase {ECO:0000256|PIRNR:PIRNR000447}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00261177224181145-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K09458fabF EC:2.3.1.179 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Biotin metabolismmap00780


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000261s00014371.1PF00109.21ketoacyl-synt631382.40E-09
Glyur000261s00014371.1PF00109.21ketoacyl-synt1422905.40E-37
Glyur000261s00014371.1PF02801.17Ketoacyl-synt_C2994102.50E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.801
SRR1783600control25.207
SRR1783602moderate drought stress16.971
SRR1811619moderate drought stress15.810

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.346
DRR006520Root Summer glycyrrhizin high producing strain29.982
DRR006521Root Winter glycyrrhizin high producing strain12.070
DRR006522Root Winter glycyrrhizin high producing strain11.870
DRR006523Root Summer glycyrrhizin low producing strain22.811
DRR006524Root Summer glycyrrhizin low producing strain22.564
DRR006525Leaf Summer glycyrrhizin high producing strain25.352
DRR006526Leaf Summer glycyrrhizin high producing strain25.362

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)95.604
SRR2868004Drought Stress(Tissue:root)49.420
SRR2967015Control (Tissue:root)46.006

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave38.431
SRR9715740Leave36.157
SRR9715741Leave28.315
SRR9715739Root43.418
SRR9715742Root38.714
SRR9715743Root34.691

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h61.042
SRR8749028MeJA induced 9h19.277
SRR8749029MeJA induced 9h20.117
SRR8749030Uninduced8.095
SRR8749031Uninduced3.028
SRR8749032Uninduced8.191

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root62.127
SRR8400027Control-Root61.443

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved