Gene detail information of Glyur000261s00014381.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34450.1 | 1.00E-28 | HMG-box (high mobility group) DNA-binding family protein |
| NR | XP_004504692.1 | 4.38E-76 | PREDICTED: high mobility group B protein 14-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|O64702|HMG14_ARATH | 2.00E-47 | High mobility group B protein 14 |
| trEMBL | tr|I3S5Q5|I3S5Q5_LOTJA | 5.00E-74 | Uncharacterized protein {ECO:0000313|EMBL:AFK35597.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00261 | 220650 | 224576 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000261s00014381.1 | PF00505.14 | HMG_box | 67 | 136 | 5.00E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.290 |
| SRR1783600 | control | 15.256 |
| SRR1783602 | moderate drought stress | 12.308 |
| SRR1811619 | moderate drought stress | 12.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 24.644 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.983 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.351 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.334 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.289 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.224 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.439 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.965 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 38.900 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.093 |
| SRR2967015 | Control (Tissue:root) | 38.689 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 18.569 |
| SRR9715740 | Leave | 22.660 |
| SRR9715741 | Leave | 19.700 |
| SRR9715739 | Root | 2.780 |
| SRR9715742 | Root | 6.384 |
| SRR9715743 | Root | 5.968 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 45.666 |
| SRR8749028 | MeJA induced 9h | 23.172 |
| SRR8749029 | MeJA induced 9h | 50.403 |
| SRR8749030 | Uninduced | 11.103 |
| SRR8749031 | Uninduced | 14.172 |
| SRR8749032 | Uninduced | 12.198 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.759 |
| SRR8400027 | Control-Root | 33.105 |