Gene detail information of Glyur000262s00020203.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G11440.1 | 7.00E-94 | myb domain protein 65 |
| NR | KEH32923.1 | 0 | myb transcription factor [Medicago truncatula] |
| Swissprot | tr|Q0JIC2|GAM1_ORYSJ | 1.00E-95 | Transcription factor GAMYB |
| trEMBL | tr|A0A072UV52|A0A072UV52_MEDTR | 0 | Myb transcription factor {ECO:0000313|EMBL:KEH32923.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00262 | 6757 | 11519 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000262s00020203.1 | PF00249.26 | Myb_DNA-binding | 38 | 85 | 1.20E-15 |
| Glyur000262s00020203.1 | PF00249.26 | Myb_DNA-binding | 91 | 134 | 3.30E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.109 |
| SRR1783600 | control | 3.149 |
| SRR1783602 | moderate drought stress | 3.328 |
| SRR1811619 | moderate drought stress | 3.455 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.139 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.380 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.919 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.015 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.925 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.264 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.109 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.934 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.386 |
| SRR2967015 | Control (Tissue:root) | 4.314 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.365 |
| SRR9715740 | Leave | 7.402 |
| SRR9715741 | Leave | 2.988 |
| SRR9715739 | Root | 7.873 |
| SRR9715742 | Root | 3.491 |
| SRR9715743 | Root | 3.770 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.746 |
| SRR8749028 | MeJA induced 9h | 5.811 |
| SRR8749029 | MeJA induced 9h | 3.354 |
| SRR8749030 | Uninduced | 7.116 |
| SRR8749031 | Uninduced | 6.380 |
| SRR8749032 | Uninduced | 4.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.645 |
| SRR8400027 | Control-Root | 16.137 |