Gene detail

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Gene detail information of Glyur000262s00020204.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G56790.1	6.00E-84	Protein kinase superfamily protein
NR	XP_004516526.1	0	PREDICTED: inactive protein kinase SELMODRAFT_444075-like [Cicer arietinum]
COG	NP_623114.1	2.00E-27	Serine/threonine protein kinase [Thermoanaerobacter tengcongensis MB4]
Swissprot	tr\|Q9ZUE0\|PEK12_ARATH	2.00E-75	Proline-rich receptor-like protein kinase PERK12
trEMBL	tr\|A0A072UUB3\|A0A072UUB3_MEDTR	0	Dual-specificity kinase domain protein {ECO:0000313\|EMBL:KEH32931.1}

Sequence

Transcript Sequence

>Glyur000262s00020204.1
ATGATCTCAGTTGATTCCAGTTCATTTGTTTCAACAAACCAGAAAATCATTGAAGAAAACTGTACCAGGAAAAAGAAAGACTATCATATGAGCCGGTACATCAATAAGCTCACTGAGCACTGTCAAATGAACAAGATTGGACTCCATATAGAAGTGCTTGTAGGTCCTGCTTCACAGGTTATTTCTGAGGCTGCAAGAAAATTCCAGGCCACAAGTTTGATACTTGATAGACAGATGCACAAAGATATGAAGCATTTGAAGGGCCGGATCCCTTGTGGTATGTATAGGATAACAAGTGACAATTCCATTGAAAAGTTGAAAGATGCAAACTTAACATCCACAAAACTTGCTGAAAGGCAAGAAAATGTAAGCTATGCAGAAATGTTCCCAGGAAGCGCAGAGGAAGTAGTTTCTCTTCAGATGTCCAGGTCTTCATCTAGTGATCTGTTCTCGTCAACCGGATTTTCAAGTCANTGGAGTACCGATGCCTCTACTTCTAATATTGGAGGTTCACGGNATGGCCTTCAAAAATACCAGGAGGGGGAGTTTTTATCAAATATAGAACAAGAAGCACAAGGGAGTGGATCACTATTTCATATTTCTGGGAATCAAGAAACAAGCCAAACAGAAATAAATCAGAAAGGGAAACTAATTGACTACCAGGAGCAGCAGCACAACAGCAATAATGAAACATCTCATATGGAGGAAGAATTCATATATCCACTTTGTTCTGTGTGCAAGAATAGACGACCNAAAATCGGATGGAAGAGAGACTTCAGTTACACAGAACTCTACACTGCTACACAGGGATTTTCTGCTAAGAACTTTCTATCAGAAGGTGGGTTTGGATCTGTCTACAAAGGACAACTGAATGGAATGACAGTTGCTGTTAAACAACATAGAAGTGAAAGCTTCCAAGGAGAGAAGGAATTTAAGTCTGAAGTCAATGTACTTAGCAAAGCAAGACATGAGAATGTGGTCATGCTGCTAGGTTCGTGCTCAGAAGGAAATAATAGGCTTCTTGTTTATGAATATGTTTGCAATGGCTCACTTGACCAACATCTATCAGAACACTCTAGATCACCTCTTACTTGGAAAGATAGGATCAAGGTAGCTATTGGAGCTGCCAAAGGCTTACTATACTTACACAAAAATAACATAATACACAGAGATGTGAGACCAAACAATATCCTTATAACACATGATCATCAACCACTGATAGGAGACTTTGGATTAGCAAGAACTCACAATCAAGACTTGACACACTCAACGGATGTTGTTGGAACCTGGGGGTATTTGGCACCAGAATATGCAGAATATGGCAAAGTGTCAACNAGAACAGATGTATATTCTTTTGGAGTGGTTCTACTACAGCTTATAACTGGAATGAGAACTACAGACAAAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTCTAAGAGAGAGAAATTATCCAGATTTAATTGATGAAAGGATCATTAACTCTCATGATTACCATCAACTATTTTGGATGGTACGACTAGCAGAGAAATGTCTAAGCAGGGACCCTAAGAAGAGACTAAATATGCTTGTGGTTGTTAATGCTTTGACTGACATTTCGGAAGGCAACACATGTCACATCGGAAGTGGGGATTACTCCCCTGCAAGGTCACATTCATGCTATAGTGATTCAGACTTTGATGAATCAGAAGATGAAGTGCAGGGACCCTTGGAGTGCGAAGGTGAGATACAAAGCCTCAGCTCAGACTCAGAATGCATAGCAAGCAATAGCATAAGTCAGATGATTGTGAGACAACCACCATCCCCTCCAATTCAGAGCATCTCTTCAAGTGGCTCAAGCTCATTTGAGTTTTATGATGAATCAACTAAAAAACAGCACCCCAACAACCATGAAACACATAATCATCAAATGGTTGTTGAACAACAACAACAACAACAACAACAACCTGAGAGTTCTGTTTGTTCTGTGTGCTACAACAGGAGACCAAGATTTGAATGGAAGAGGGACTTCACATATGCTGAGTTGCATGCAGCCACACAAGGCTTTTCACCAAAGAACTTTCTGTCTGAAGGTGGGTTTGGTTCTGTCTATAAAGGGGAGCTTTATGGACAGAAGATTGCCGTTAAGCAATATTATATGCATGCAAGCCACAAAGAAGAAGANAAAGAGTTTGAGTCTGAAGTTGATGCACTCAGCAAAGCAAGACATGAGAATGTGGTCATGATGATGGGATCTTGTTCAGAAGGAAACCATAGGCTTCTTGTTTATGAATATGTCTGCAATGGTTCACTAGACCAACATTTATCGCAACATTCTCGCAAACCTCTTNGCTGGCAAGACAGGGTGAAAGTAGCTAATGGAGCTGCCAAAGGNTTGCTGTACCTGCACAAGAACAACATCATCCACAGAGATATAACACCAAACAACATTCTTCTTACACATGATTATGAAGTATTGCTGGGTGATTTTGGTTTGGCTAAAATTGGGACTGAAGAATCCTCATGCTTGATAGACTGTGCTGGAAATCTGGCATATTGGGCACCAGAATATGCAGAATTTGGTAAAGTGTCAATTAAGACAGATGTATATTCTTTTGGGGTGGTTCTACTAGAGCTAATAACTGGAATGAGGACTACAGACAAAAGACTTGGAGAAAAAGGAAGGATGATTGATTCCCATGACTGTCATCAACTCTTTTGGATGAGCCGTCTAGCTGGAAACTGTCTCAAGAAGGATCCTTATAAGCGATTGGATATGAGTACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00262	13243	27639	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.6.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0004713 protein tyrosine kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000262s00020204.1	PF07714.12	Pkinase_Tyr	274	531	3.10E-49
Glyur000262s00020204.1	PF07714.12	Pkinase_Tyr	691	923	1.30E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.026
SRR1783600	control	0.026
SRR1783602	moderate drought stress	0.150
SRR1811619	moderate drought stress	0.137

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.067
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.066

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.591
SRR2868004	Drought Stress(Tissue:root)	1.000
SRR2967015	Control (Tissue:root)	0.311

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.073
SRR9715740	Leave	0.000
SRR9715741	Leave	0.070
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.066
SRR8749028	MeJA induced 9h	0.134
SRR8749029	MeJA induced 9h	0.061
SRR8749030	Uninduced	0.159
SRR8749031	Uninduced	0.636
SRR8749032	Uninduced	0.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.387
SRR8400027	Control-Root	2.295