Gene detail information of Glyur000262s00020220.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G36010.12.00E-118E2F transcription factor 3
NRXP_004497676.10PREDICTED: transcription factor E2FA-like [Cicer arietinum]
Swissprottr|Q9FNY0|E2FA_ARATH6.00E-141Transcription factor E2FA
trEMBLtr|I1JGJ7|I1JGJ7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA02G35850.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00262189232194694+


Gene family

Gene familysubfamily
Transcription Factors FamilyE2F-DP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005667  transcription factor complex


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000262s00020220.1PF02319.15E2F_TDP1482132.20E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.237
SRR1783600control1.955
SRR1783602moderate drought stress1.293
SRR1811619moderate drought stress1.391

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.380
DRR006520Root Summer glycyrrhizin high producing strain1.068
DRR006521Root Winter glycyrrhizin high producing strain2.656
DRR006522Root Winter glycyrrhizin high producing strain2.623
DRR006523Root Summer glycyrrhizin low producing strain1.122
DRR006524Root Summer glycyrrhizin low producing strain1.071
DRR006525Leaf Summer glycyrrhizin high producing strain1.654
DRR006526Leaf Summer glycyrrhizin high producing strain1.828

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.463
SRR2868004Drought Stress(Tissue:root)2.617
SRR2967015Control (Tissue:root)2.935

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.903
SRR9715740Leave1.233
SRR9715741Leave1.288
SRR9715739Root0.551
SRR9715742Root0.793
SRR9715743Root0.727

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.962
SRR8749028MeJA induced 9h12.211
SRR8749029MeJA induced 9h8.370
SRR8749030Uninduced3.704
SRR8749031Uninduced5.571
SRR8749032Uninduced3.168

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.385
SRR8400027Control-Root3.376

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved