Gene detail information of Glyur000263s00013572.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18060.1 | 0 | transducin family protein / WD-40 repeat family protein |
| NR | XP_004496970.1 | 0 | PREDICTED: 66 kDa stress protein-like isoform X2 [Cicer arietinum] |
| COG | YP_001865069.1 | 5.00E-34 | hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q8W1K8|MUT11_CHLRE | 2.00E-11 | Protein Mut11 |
| trEMBL | tr|A0A072W1G5|A0A072W1G5_MEDTR | 0 | Transducin/WD40 repeat protein {ECO:0000313|EMBL:KEH44130.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00263 | 89703 | 95378 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 50 | 84 | 1.50E-05 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 138 | 170 | 0.014 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 184 | 214 | 1.60E-06 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 230 | 261 | 3.30E-09 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 485 | 519 | 0.028 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 533 | 561 | 1.90E-06 |
| Glyur000263s00013572.1 | PF00400.27 | WD40 | 574 | 605 | 0.00028 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.984 |
| SRR1783600 | control | 5.923 |
| SRR1783602 | moderate drought stress | 7.435 |
| SRR1811619 | moderate drought stress | 7.384 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.707 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.999 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.234 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.171 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.003 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.245 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.713 |
| SRR2967015 | Control (Tissue:root) | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.973 |
| SRR9715740 | Leave | 2.241 |
| SRR9715741 | Leave | 7.471 |
| SRR9715739 | Root | 1.449 |
| SRR9715742 | Root | 4.175 |
| SRR9715743 | Root | 3.807 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.019 |
| SRR8749028 | MeJA induced 9h | 2.143 |
| SRR8749029 | MeJA induced 9h | 1.189 |
| SRR8749030 | Uninduced | 0.702 |
| SRR8749031 | Uninduced | 0.360 |
| SRR8749032 | Uninduced | 0.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.588 |
| SRR8400027 | Control-Root | 5.962 |