Gene detail information of Glyur000263s00013588.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34200.10D-3-phosphoglycerate dehydrogenase
NRXP_004496955.10PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like isoform X1 [Cicer arietinum]
COGYP_005442157.12.00E-144D-3-phosphoglycerate dehydrogenase [Caldilinea aerophila DSM 14535 = NBRC 104270]
Swissprottr|O49485|SERA1_ARATH0D-3-phosphoglycerate dehydrogenase 1, chloroplastic (Precursor)
trEMBLtr|I1LEI9|I1LEI9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G40750.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00263171694174973-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00058serA, PHGDH EC:1.1.1.95 Carbon metabolism map01200
Biosynthesis of amino acidsmap01230
Methane metabolismmap00680
Glycine, serine and threonine metabolismmap00260


Gene Ontology

biological_process

GO:0006564  L-serine biosynthetic process

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0004617  phosphoglycerate dehydrogenase activity

GO:0016597  amino acid binding

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000263s00013588.1PF00389.252-Hacid_dh563656.70E-35
Glyur000263s00013588.1PF02826.142-Hacid_dh_C1583339.60E-62
Glyur000263s00013588.1PF01842.20ACT5245843.30E-05


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control109.204
SRR1783600control109.464
SRR1783602moderate drought stress88.242
SRR1811619moderate drought stress87.872

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain112.529
DRR006520Root Summer glycyrrhizin high producing strain111.378
DRR006521Root Winter glycyrrhizin high producing strain272.455
DRR006522Root Winter glycyrrhizin high producing strain266.277
DRR006523Root Summer glycyrrhizin low producing strain78.959
DRR006524Root Summer glycyrrhizin low producing strain78.675
DRR006525Leaf Summer glycyrrhizin high producing strain12.529
DRR006526Leaf Summer glycyrrhizin high producing strain12.435

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)127.551
SRR2868004Drought Stress(Tissue:root)65.051
SRR2967015Control (Tissue:root)57.159

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave18.479
SRR9715740Leave18.266
SRR9715741Leave25.137
SRR9715739Root109.515
SRR9715742Root225.694
SRR9715743Root201.347

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h134.806
SRR8749028MeJA induced 9h279.390
SRR8749029MeJA induced 9h271.067
SRR8749030Uninduced73.901
SRR8749031Uninduced23.616
SRR8749032Uninduced100.365

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root157.377
SRR8400027Control-Root138.076

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved