Gene detail

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Gene detail information of Glyur000263s00013590.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G34220.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_006589635.1	0	PREDICTED: receptor protein kinase-like protein At4g34220-like [Glycine max]
COG	YP_004775215.1	5.00E-19	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q94C77\|RPKL_ARATH	0	Receptor protein kinase-like protein At4g34220 (Precursor)
trEMBL	tr\|K7LLI3\|K7LLI3_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G40780.2}

Sequence

Transcript Sequence

>Glyur000263s00013590.1
ATGGGCCTTTACTCCAAGAATCTCCATTTGTGGTGGAAACTCTCATCCTTTCTTCTTCTTCTACTGCTCCAATTCGTTTCTGCTCTCAACTCTGATGGAGCTCACTTGCTTAAGTTCAGATACTCCATCCTTAGTGACCCACTATTAGTCTTTGACAACTGGAACTACGATGATGCAACTCCATGTTCATGGAATGGAGTCACATGCACAGAAATTGGAGACCCTGGTGGTGACTTGTTCAGAGTGACTAGCTTGGTCCTTCCAAACAGCCAGCTTCTTGGTTCCATCTCTGAAGAGTTATTCATGATCCAATACCTTCGCCACCTCGATCTCTCCAACAATTTCCTCAACGGGTCTCTACCAAACTCTCTCTTCAACAACACTTCTCAGCTACAAGTCCTTTCCCTCTCCAACAATGTCATCTCAGGAANGCTTCCCCAGTTGATTGGTCAATTGAAAACCCTCCAAAAACTCAACCTTTCCGACAATGCCTTTGCCGGGTCGATCCCAGAAAACCTCACTTCTTTACAGAATCTAACCGTTGTTTCCCTGAAGAGTAACTACTTCTCAGGTGGAATCCCAACAGGGTTCAACTCTGTTGAGATTCTGGATCTATCCTCCAATTTACTCAATGGTTCTCTCCCAAATGACTTCGGTGGTGAAAGCCTGAGCTATTTAAACCTCTCTTACAATAAAATCTCAGGGAAAATACCACCAGCATTTGCCAAACACATTCCTGGGAACTCCACCATAGACCTCTCATTCAACAACCTCACAGGACCAATACCCGAGTCTTTAGCTTTGCTCAATCAGAAAACGGATTTACTATCTGGGAATGCTGATCTATGCGGGAAACCCCTGAAGATTCTTTGCACCATTCCCTCCACAATGTCCACTCCTCCACTCAATGTCACCAACACATCTTCACCAGCAATTGCAGCCTTTCCAATAAACACAACAGGAACAACCCCAAGTGGTAGTGGTGGTTCTTCTCANAACGTTTCACAGAGTGGCCTTAAACCTGCTACCATAGCAGCCATCGTTGTAGGAGACTTAGCTGGAATAGCCCTTTTGGCCCTCATCATTCTCTTCGTATACCAACAAAGAAAGAGAAGAAGAGATCCAAAACCAGCAACAAGTACCACTGCTCCTACAACTACCAATTACTCAGAGAAGAAAGAAGTAACGGTGGCAAAACAAAACCGTGACGTCATGATAATTCCATGTTCGTGCTTAACAATTAAAGAAGGAGAGACTTCAGAGGAAGCAACAAGTTCCGACAGTGACCACGACAATAACGGTACCGTTGCGGTGGACATCATGGCGGCGCAAAAAGGGAACCTTCCGAGAGAAGGGACGCTTGTGACGGTGGATGGAGAGACGAGGTTGGAGTTGGAGACATTGTTGAAGGCTTCGGCTTATATTCTTGGGAANAGCCGTGTGAGCATTGTGTATAAGGCGGTGCTTCAGGATGGGAGGGTCTTTGCGGTTAGAAGGATTGGTGAGTGTGGGATTGAGAGAATGAAGGAGTTTGAGAACCAAGTGAGGGCCATTGCTAAGCTTCGCCATAACAATTTGGTCAGGCTTCGTGGGTTCTGTTGGGGTCAAGATGAGAAGCTTTTAATCTCTGACTTTGTTCCCAATGGCAGCCTCGCCGGCATCGGAAGAGGGGGTTCGTCTCCGGTGAGCTTGTCGTTGGATGCGCGGTTGAGGATAGCAAAAGGGGTTGCGCGNGGACTGGCTTTCATTCACGAGAAGAAGCACGTGCATGGCAACGTTAAACCCAGCAACANCTTGTTAAGCTCGGAGATGGAACCCATCATAAGCGACTTTGGGCTGGACCGGCTCCTCTTGAATGATATCCACCACAGAGCAAACGGTTCGGCCAGGCAATTAATGGCTACCGTGAACCAACGAACCCAACAAGACCTTCTTTTTCCCAACGGTTCAAGCCCCTATGCAACAACAATGGGGCCATCATCATCATCTAGTGGGGGATCACAAGTCCCATACCAAGCACCAGAGTCACTTCAAAACATTAAGCCAAGCCCCAAATGGGACGTGTATTCCTTTGGCATTGTGTTGCTGGAGCTTCTAAGTGGGAGGGTTTTCTCGGACCGGGACTTGGACCAGTGGTCTGCCCCCGCCGGTTCGGTTGAAGAGGAGAGAAACCGGGTTTTGAGAATGGCTGACGTGGCCATCAAGCCCGAGGTGGAAGGCAGAGAAAACGTGGTGTTCACGTGTTTNAAGTTGGGGATTAGCTGTGCCTCTCTTGTCCCACAAAAGAGACCGTCCATGAAAGAGGCTCTACAAATCTTGGAGAAGATCCCTGTTGCTGCCATTAATTATTCTTCATCATGATGATGTAATATTTGGACTCCCGNTTTTTAGTTCAAGGTGTTTTTTTTAGCCCTTTTTTTTGTCCATCTTTTTTTTTAGCATGAAGAAAGGGAAAGATTAGAGTGATGCATGTGTTTGTTTATGGGAGATAGCAATTATTGTAACTTTGACCGATGAATCGAATCTTTGTCTGTATGAGTTGCTTTTGCTGACGATGCACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00263	183405	186649	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000263s00013590.1	PF08263.7	LRRNT_2	29	69	6.80E-11
Glyur000263s00013590.1	PF13855.1	LRR_8	106	164	1.80E-07
Glyur000263s00013590.1	PF00560.28	LRR_1	222	242	0.097
Glyur000263s00013590.1	PF00069.20	Pkinase	476	771	6.90E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.668
SRR1783600	control	5.783
SRR1783602	moderate drought stress	3.159
SRR1811619	moderate drought stress	3.123

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.514
DRR006520	Root Summer glycyrrhizin high producing strain	5.269
DRR006521	Root Winter glycyrrhizin high producing strain	0.043
DRR006522	Root Winter glycyrrhizin high producing strain	0.043
DRR006523	Root Summer glycyrrhizin low producing strain	3.495
DRR006524	Root Summer glycyrrhizin low producing strain	3.285
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.871
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.829

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	12.203
SRR2868004	Drought Stress(Tissue:root)	8.125
SRR2967015	Control (Tissue:root)	7.997

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.452
SRR9715740	Leave	0.306
SRR9715741	Leave	0.776
SRR9715739	Root	1.866
SRR9715742	Root	2.468
SRR9715743	Root	2.760

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.056
SRR8749028	MeJA induced 9h	0.132
SRR8749029	MeJA induced 9h	0.063
SRR8749030	Uninduced	0.168
SRR8749031	Uninduced	0.165
SRR8749032	Uninduced	0.153

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	6.891
SRR8400027	Control-Root	6.085