Gene detail information of Glyur000264s00019965.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G61415.1 | 2.00E-106 | SKP1-like 21 |
| NR | XP_006587846.1 | 0 | PREDICTED: SKP1-like protein 21-like isoform X1 [Glycine max] |
| Swissprot | tr|Q8LF97|ASK21_ARATH | 1.00E-155 | SKP1-like protein 21 |
| trEMBL | tr|I1L6J4|I1L6J4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G39480.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00264 | 65686 | 71670 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | SKP1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000264s00019965.1 | PF01466.14 | Skp1 | 102 | 167 | 4.00E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.399 |
| SRR1783600 | control | 0.355 |
| SRR1783602 | moderate drought stress | 0.432 |
| SRR1811619 | moderate drought stress | 0.385 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.373 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.197 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.029 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.983 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.534 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.440 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.444 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.908 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.952 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.757 |
| SRR2967015 | Control (Tissue:root) | 1.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.470 |
| SRR9715740 | Leave | 4.179 |
| SRR9715741 | Leave | 2.828 |
| SRR9715739 | Root | 0.122 |
| SRR9715742 | Root | 0.612 |
| SRR9715743 | Root | 0.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.410 |
| SRR8749028 | MeJA induced 9h | 2.980 |
| SRR8749029 | MeJA induced 9h | 3.088 |
| SRR8749030 | Uninduced | 1.937 |
| SRR8749031 | Uninduced | 4.898 |
| SRR8749032 | Uninduced | 2.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.867 |
| SRR8400027 | Control-Root | 1.601 |