Gene detail information of Glyur000265s00020607.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15790.2 | 8.00E-68 | RING/U-box superfamily protein |
| NR | KHN08356.1 | 3.29E-138 | E3 ubiquitin-protein ligase [Glycine soja] |
| Swissprot | tr|Q8LE94|RING3_ARATH | 3.00E-76 | E3 ubiquitin-protein ligase At3g02290 |
| trEMBL | tr|K7MWC2|K7MWC2_SOYBN | 2.00E-139 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G04340.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00265 | 47697 | 56506 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000265s00020607.1 | PF13639.1 | zf-RING_2 | 211 | 253 | 1.20E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.000 |
| SRR1783600 | control | 7.327 |
| SRR1783602 | moderate drought stress | 8.127 |
| SRR1811619 | moderate drought stress | 7.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.557 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.647 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 17.582 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.115 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.873 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.403 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.247 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.355 |
| SRR2967015 | Control (Tissue:root) | 23.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.779 |
| SRR9715740 | Leave | 11.223 |
| SRR9715741 | Leave | 13.928 |
| SRR9715739 | Root | 4.741 |
| SRR9715742 | Root | 7.926 |
| SRR9715743 | Root | 8.423 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.997 |
| SRR8749028 | MeJA induced 9h | 8.727 |
| SRR8749029 | MeJA induced 9h | 5.100 |
| SRR8749030 | Uninduced | 3.886 |
| SRR8749031 | Uninduced | 3.531 |
| SRR8749032 | Uninduced | 2.469 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.249 |
| SRR8400027 | Control-Root | 20.752 |