Gene detail information of Glyur000265s00020612.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15740.1 | 0 | O-fucosyltransferase family protein |
| NR | XP_004507283.1 | 0 | PREDICTED: uncharacterized protein At1g04910-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q8W486|Y1491_ARATH | 2.00E-74 | Uncharacterized protein At1g04910 |
| trEMBL | tr|A0A072U6Z8|A0A072U6Z8_MEDTR | 0 | GDP-fucose O-fucosyltransferase-like protein {ECO:0000313|EMBL:KEH25156.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00265 | 95239 | 99044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000265s00020612.1 | PF10250.4 | O-FucT | 100 | 409 | 7.70E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.848 |
| SRR1783600 | control | 11.064 |
| SRR1783602 | moderate drought stress | 10.458 |
| SRR1811619 | moderate drought stress | 10.487 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.553 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.259 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.133 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.956 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.785 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.741 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.301 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.366 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.703 |
| SRR2868004 | Drought Stress(Tissue:root) | 40.932 |
| SRR2967015 | Control (Tissue:root) | 17.835 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.715 |
| SRR9715740 | Leave | 9.133 |
| SRR9715741 | Leave | 12.598 |
| SRR9715739 | Root | 5.441 |
| SRR9715742 | Root | 19.861 |
| SRR9715743 | Root | 17.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.108 |
| SRR8749028 | MeJA induced 9h | 1.453 |
| SRR8749029 | MeJA induced 9h | 0.567 |
| SRR8749030 | Uninduced | 1.627 |
| SRR8749031 | Uninduced | 0.751 |
| SRR8749032 | Uninduced | 1.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 18.236 |
| SRR8400027 | Control-Root | 21.989 |