Gene detail information of Glyur000266s00012617.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G04500.1 | 5.00E-77 | CCT motif family protein |
| NR | XP_007144132.1 | 0 | hypothetical protein PHAVU_007G131300g [Phaseolus vulgaris] |
| Swissprot | tr|Q940T9|COL4_ARATH | 1.00E-10 | Zinc finger protein CONSTANS-LIKE 4 |
| trEMBL | tr|V7BI39|V7BI39_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW16126.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00266 | 54698 | 58207 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Orphans |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000266s00012617.1 | PF06203.9 | CCT | 340 | 383 | 2.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.140 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.135 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.032 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.075 |
| SRR2967015 | Control (Tissue:root) | 0.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.365 |
| SRR9715740 | Leave | 0.485 |
| SRR9715741 | Leave | 0.713 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.024 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.061 |
| SRR8749029 | MeJA induced 9h | 0.049 |
| SRR8749030 | Uninduced | 0.210 |
| SRR8749031 | Uninduced | 0.390 |
| SRR8749032 | Uninduced | 0.193 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.104 |
| SRR8400027 | Control-Root | 0.082 |