Gene detail information of Glyur000266s00012629.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G13430.10isopropyl malate isomerase large subunit 1
NRXP_003555497.10PREDICTED: 3-isopropylmalate dehydratase-like [Glycine max]
COGYP_007091479.10homoaconitate hydratase family protein [Chroococcidiopsis thermalis PCC 7203]
Swissprottr|Q94AR8|LEUC_ARATH03-isopropylmalate dehydratase large subunit (Precursor)
trEMBLtr|I1NHY9|I1NHY9_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G34160.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002669469699461-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01703leuC EC:4.2.1.33 4.2.1.35 2-Oxocarboxylic acid metabolism map01210
Biosynthesis of amino acidsmap01230
C5-Branched dibasic acid metabolismmap00660
Valine, leucine and isoleucine biosynthesismap00290


Gene Ontology

biological_process

GO:0008152  metabolic process



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000266s00012629.1PF00330.15Aconitase682007.40E-16
Glyur000266s00012629.1PF00330.15Aconitase2163564.40E-27
Glyur000266s00012629.1PF00330.15Aconitase3624981.50E-17


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.824
SRR1783600control4.843
SRR1783602moderate drought stress2.929
SRR1811619moderate drought stress2.902

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain2.163
DRR006520Root Summer glycyrrhizin high producing strain2.295
DRR006521Root Winter glycyrrhizin high producing strain17.105
DRR006522Root Winter glycyrrhizin high producing strain16.183
DRR006523Root Summer glycyrrhizin low producing strain2.690
DRR006524Root Summer glycyrrhizin low producing strain2.620
DRR006525Leaf Summer glycyrrhizin high producing strain0.000
DRR006526Leaf Summer glycyrrhizin high producing strain0.000

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.338
SRR2868004Drought Stress(Tissue:root)1.550
SRR2967015Control (Tissue:root)0.374

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave1.517
SRR9715740Leave1.136
SRR9715741Leave1.417
SRR9715739Root0.050
SRR9715742Root44.893
SRR9715743Root35.606

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h40.285
SRR8749028MeJA induced 9h69.422
SRR8749029MeJA induced 9h151.143
SRR8749030Uninduced117.828
SRR8749031Uninduced249.548
SRR8749032Uninduced257.665

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.539
SRR8400027Control-Root1.922

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved