Gene detail information of Glyur000266s00012647.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10580.10Transducin/WD40 repeat-like superfamily protein
NRXP_004495236.10PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Cicer arietinum]
COGYP_003167824.11.00E-34WD-40 repeat-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1]
Swissprottr|Q8W1K8|MUT11_CHLRE1.00E-24Protein Mut11
trEMBLtr|A0A072V0M7|A0A072V0M7_MEDTR0Pre-mRNA splicing factor {ECO:0000313|EMBL:KEH31690.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00266202910206974-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000266s00012647.1PF00400.27WD402883252.90E-08
Glyur000266s00012647.1PF00400.27WD403303687.40E-10
Glyur000266s00012647.1PF00400.27WD404174542.10E-06
Glyur000266s00012647.1PF00400.27WD405495840.00024


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.542
SRR1783600control25.615
SRR1783602moderate drought stress34.486
SRR1811619moderate drought stress34.150

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain28.826
DRR006520Root Summer glycyrrhizin high producing strain28.090
DRR006521Root Winter glycyrrhizin high producing strain23.179
DRR006522Root Winter glycyrrhizin high producing strain22.444
DRR006523Root Summer glycyrrhizin low producing strain35.805
DRR006524Root Summer glycyrrhizin low producing strain36.259
DRR006525Leaf Summer glycyrrhizin high producing strain11.492
DRR006526Leaf Summer glycyrrhizin high producing strain11.363

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)27.708
SRR2868004Drought Stress(Tissue:root)26.083
SRR2967015Control (Tissue:root)26.800

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave13.195
SRR9715740Leave18.707
SRR9715741Leave15.218
SRR9715739Root22.100
SRR9715742Root25.909
SRR9715743Root25.798

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h36.591
SRR8749028MeJA induced 9h18.976
SRR8749029MeJA induced 9h23.472
SRR8749030Uninduced9.947
SRR8749031Uninduced15.054
SRR8749032Uninduced19.504

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.725
SRR8400027Control-Root24.032

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved