Gene detail information of Glyur000266s00012649.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G24180.20Beta-glucosidase, GBA2 type family protein
NRXP_004495235.10PREDICTED: non-lysosomal glucosylceramidase-like isoform X2 [Cicer arietinum]
COGYP_590763.12.00E-90hypothetical protein Acid345_1688 [Candidatus Koribacter versatilis Ellin345]
trEMBLtr|V7BEC6|V7BEC6_PHAVU0Non-lysosomal glucosylceramidase {ECO:0000256|PIRNR:PIRNR028944}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00266213922223791-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH116


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17108GBA2 EC:3.2.1.45 Sphingolipid metabolism map00600
Other glycan degradationmap00511


Gene Ontology

biological_process

GO:0006665  sphingolipid metabolic process


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0003824  catalytic activity

GO:0004348  glucosylceramidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000266s00012649.1PF12215.3GBA2_N934029.70E-58
Glyur000266s00012649.1PF04685.8DUF6085429049.50E-148


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control4.541
SRR1783600control4.579
SRR1783602moderate drought stress5.092
SRR1811619moderate drought stress5.026

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.466
DRR006520Root Summer glycyrrhizin high producing strain7.105
DRR006521Root Winter glycyrrhizin high producing strain17.340
DRR006522Root Winter glycyrrhizin high producing strain16.859
DRR006523Root Summer glycyrrhizin low producing strain7.115
DRR006524Root Summer glycyrrhizin low producing strain7.073
DRR006525Leaf Summer glycyrrhizin high producing strain4.172
DRR006526Leaf Summer glycyrrhizin high producing strain4.156

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.817
SRR2868004Drought Stress(Tissue:root)23.468
SRR2967015Control (Tissue:root)24.740

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.961
SRR9715740Leave9.560
SRR9715741Leave13.334
SRR9715739Root3.007
SRR9715742Root12.575
SRR9715743Root10.949

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h7.890
SRR8749028MeJA induced 9h10.476
SRR8749029MeJA induced 9h6.198
SRR8749030Uninduced9.790
SRR8749031Uninduced19.360
SRR8749032Uninduced11.471

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.882
SRR8400027Control-Root18.064

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved