Gene detail information of Glyur000267s00016661.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G31180.24.00E-156Class II aminoacyl-tRNA and biotin synthetases superfamily protein
NRXP_004512467.10PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cicer arietinum]
COGYP_006705440.15.00E-85aspartate--tRNA ligase [Cardinium endosymbiont cEper1 of Encarsia pergandiella]
Swissprottr|O48593|SYNO_ARATH1.00E-19Asparagine--tRNA ligase, chloroplastic/mitochondrial (Precursor)
trEMBLtr|I1M984|I1M984_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G11711.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold002671131714969+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01876DARS, aspS EC:6.1.1.12 Aminoacyl-tRNA biosynthesis map00970


Gene Ontology

biological_process

GO:0006418  tRNA aminoacylation for protein translation

GO:0006422  aspartyl-tRNA aminoacylation


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0000166  nucleotide binding

GO:0003676  nucleic acid binding

GO:0004812  aminoacyl-tRNA ligase activity

GO:0004815  aspartate-tRNA ligase activity

GO:0005524  ATP binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000267s00016661.1PF01336.20tRNA_anti-codon211059.20E-08
Glyur000267s00016661.1PF00152.15tRNA-synt_21434568.90E-57


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.523
SRR1783600control3.654
SRR1783602moderate drought stress6.051
SRR1811619moderate drought stress5.839

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.404
DRR006520Root Summer glycyrrhizin high producing strain4.901
DRR006521Root Winter glycyrrhizin high producing strain13.244
DRR006522Root Winter glycyrrhizin high producing strain13.202
DRR006523Root Summer glycyrrhizin low producing strain5.457
DRR006524Root Summer glycyrrhizin low producing strain5.539
DRR006525Leaf Summer glycyrrhizin high producing strain2.973
DRR006526Leaf Summer glycyrrhizin high producing strain3.156

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.263
SRR2868004Drought Stress(Tissue:root)0.161
SRR2967015Control (Tissue:root)0.509

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.489
SRR9715740Leave11.342
SRR9715741Leave11.530
SRR9715739Root2.264
SRR9715742Root3.649
SRR9715743Root3.586

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.000
SRR8749030Uninduced0.001
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.829
SRR8400027Control-Root9.695

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved